Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2307
(400 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0234 - 26602660-26602728,26602814-26602988,26603077-266031... 46 1e-05
06_01_0356 + 2557127-2557193,2557272-2557315,2557433-2557528,255... 42 2e-04
01_06_0465 - 29573972-29574110,29574300-29574343,29574434-295746... 36 0.012
06_03_0740 - 24006485-24006629,24006821-24006864,24006954-240071... 36 0.016
04_04_0466 + 25433678-25434007,25434118-25434176,25434345-254344... 29 1.8
12_01_0109 + 853043-853426,853653-853787,853866-854138 28 2.4
05_05_0163 + 22842955-22844371,22845519-22845592,22845913-22845948 28 3.1
08_01_0695 + 6148873-6150051 27 7.2
02_01_0734 - 5479188-5479335,5479518-5479582,5479934-5480041,548... 27 7.2
>05_06_0234 -
26602660-26602728,26602814-26602988,26603077-26603120,
26603204-26603381,26603468-26603652,26603737-26603801,
26603985-26604066,26604342-26604434,26605096-26605191,
26605312-26605355,26605467-26605530
Length = 364
Score = 46.0 bits (104), Expect = 1e-05
Identities = 28/82 (34%), Positives = 37/82 (45%)
Frame = +3
Query: 147 HAEAMASLPPNVRRRIRALRTLQKEFVDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVN 326
H + + SL P VR+R+ LR +Q + D+EAKF+ E A R IVN
Sbjct: 46 HTDVLESLEPKVRKRVEVLREIQSQHDDLEAKFFEERAALEAKYQKMYEPLYSKRYEIVN 105
Query: 327 GTYEPNDDECLNPWRDDTEEEQ 392
G E D D+T EQ
Sbjct: 106 GVVEV--DGVTKEAADETPAEQ 125
>06_01_0356 +
2557127-2557193,2557272-2557315,2557433-2557528,
2559259-2559351,2559450-2559540,2559617-2559678,
2559754-2559938,2560022-2560199,2560293-2560336,
2560440-2560635,2560728-2560745,2560955-2561005
Length = 374
Score = 41.5 bits (93), Expect = 2e-04
Identities = 22/64 (34%), Positives = 31/64 (48%)
Frame = +3
Query: 147 HAEAMASLPPNVRRRIRALRTLQKEFVDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVN 326
H + + +L PNVR+R+ LR +Q + +IE KF+ E A R IVN
Sbjct: 47 HTDVLEALSPNVRKRVEYLREIQGQHDEIELKFFEERAALEAKYQKLYEPLYTKRYNIVN 106
Query: 327 GTYE 338
G E
Sbjct: 107 GVVE 110
>01_06_0465 -
29573972-29574110,29574300-29574343,29574434-29574602,
29574707-29574894,29575081-29575145,29575257-29575311,
29575502-29575594,29576035-29576130,29576259-29576302,
29576419-29576431
Length = 301
Score = 35.9 bits (79), Expect = 0.012
Identities = 20/64 (31%), Positives = 30/64 (46%)
Frame = +3
Query: 147 HAEAMASLPPNVRRRIRALRTLQKEFVDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVN 326
H + + SL P VR+R+ L +Q + ++EAKF E A R+ IV+
Sbjct: 29 HVDVLESLAPVVRKRVDVLIEIQSQHDELEAKFLEEKAALEANYQKLYGPLYSKRSEIVS 88
Query: 327 GTYE 338
G E
Sbjct: 89 GVLE 92
>06_03_0740 -
24006485-24006629,24006821-24006864,24006954-24007122,
24007226-24007413,24007572-24007634,24007992-24008084,
24009837-24009932,24010024-24010067,24010184-24010357,
24010764-24010974
Length = 408
Score = 35.5 bits (78), Expect = 0.016
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +3
Query: 147 HAEAMASLPPNVRRRIRALRTLQKEFVDIEAKFYSE 254
H + + SL P+VR+R+ L +Q + ++E KF+ E
Sbjct: 153 HVDVLESLAPSVRKRVDVLMEIQSQHDELEVKFFEE 188
>04_04_0466 +
25433678-25434007,25434118-25434176,25434345-25434426,
25435024-25435122,25435750-25435831,25436759-25436823,
25437241-25438308,25438369-25438446,25438550-25438596,
25438734-25438779,25438871-25438950,25439050-25439166,
25439842-25439923,25440156-25440281,25440415-25440489,
25440743-25440868,25441542-25441646
Length = 888
Score = 28.7 bits (61), Expect = 1.8
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = -3
Query: 254 FTVKLGLNVDKLLLKSSQGADSPTNIRG*GCHRFCMKAICDGRYHFIT 111
FT + L+ + LL ++ A+ T + G C++++CDG H +T
Sbjct: 177 FTFNISLSRENLLQVAAWDANLVTPHKRMGNAGLCLESLCDGSNHNVT 224
>12_01_0109 + 853043-853426,853653-853787,853866-854138
Length = 263
Score = 28.3 bits (60), Expect = 2.4
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -2
Query: 168 GMPSLLHEGDL*WPLSFHYGSRHFSTGVALVHHFXXXXXXLQTP 37
G+P L GD+ + L+F G+ H T VAL F Q+P
Sbjct: 129 GVPDLSEHGDV-YDLTFGLGADHPPTAVALRKEFQRIILYQQSP 171
>05_05_0163 + 22842955-22844371,22845519-22845592,22845913-22845948
Length = 508
Score = 27.9 bits (59), Expect = 3.1
Identities = 14/51 (27%), Positives = 28/51 (54%)
Frame = -3
Query: 377 VITPWVETFIIIRFICAIHNKSSLFIKRLVKFFIFAFECMYFTVKLGLNVD 225
V+ PW+++F I + +H+K +L K +K A + + +K G+ +D
Sbjct: 459 VLPPWLDSFPIPNAVLCLHSKINLSGKNNMKNETLA-DILVINIKTGILMD 508
>08_01_0695 + 6148873-6150051
Length = 392
Score = 26.6 bits (56), Expect = 7.2
Identities = 11/21 (52%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
Frame = +2
Query: 143 PSCRSDGIPTPECSSA-NPRL 202
PSCR+ G +P C++A +PRL
Sbjct: 65 PSCRAAGFCSPSCAAASHPRL 85
>02_01_0734 -
5479188-5479335,5479518-5479582,5479934-5480041,
5480552-5480656
Length = 141
Score = 26.6 bits (56), Expect = 7.2
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +3
Query: 120 MIAAITNRLHAEAMASLPPNVRR-RIRALRTLQKEFVD 230
M AA+ RLHA + PP + + +RA + ++ EF D
Sbjct: 5 MGAAVVRRLHAAQAQAQPPRLTKLALRAPKFVEVEFED 42
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,581,042
Number of Sequences: 37544
Number of extensions: 179982
Number of successful extensions: 437
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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