Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2307
         (400 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40800-9|AAA81494.1|  316|Caenorhabditis elegans Hypothetical pr...    46   8e-06
L13200-4|AAA28191.2|  645|Caenorhabditis elegans Hypothetical pr...    29   1.2  
Z81123-2|CAB03365.1|  734|Caenorhabditis elegans Hypothetical pr...    29   1.6  
Z71186-8|CAA94917.2| 1322|Caenorhabditis elegans Hypothetical pr...    26   8.7  
U23179-2|AAK68207.1|  345|Caenorhabditis elegans Serpentine rece...    26   8.7  

>U40800-9|AAA81494.1|  316|Caenorhabditis elegans Hypothetical
           protein D2096.8 protein.
          Length = 316

 Score = 46.4 bits (105), Expect = 8e-06
 Identities = 25/81 (30%), Positives = 39/81 (48%)
 Frame = +3

Query: 153 EAMASLPPNVRRRIRALRTLQKEFVDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVNGT 332
           + + +LP NV++R+ AL+ LQ + + IE+ FY  VH                R  IV G 
Sbjct: 17  DMIQALPLNVKQRVCALKNLQMKTIQIESDFYKRVHELEIEFEGKFKSTFDQRKAIVAGE 76

Query: 333 YEPNDDECLNPWRDDTEEEQL 395
            EP  ++   P  +  E +QL
Sbjct: 77  VEPTKEQIDTPILEGLEGDQL 97


>L13200-4|AAA28191.2|  645|Caenorhabditis elegans Hypothetical
           protein ZK1236.1 protein.
          Length = 645

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3

Query: 266 ECMYFTVKLGLNVDKLLLKSSQGADSPTNI 177
           EC++ + K GLNVDK+L        +PT I
Sbjct: 188 ECLHISAKSGLNVDKVLEAIIDRVPAPTAI 217


>Z81123-2|CAB03365.1|  734|Caenorhabditis elegans Hypothetical
           protein T14D7.2 protein.
          Length = 734

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
 Frame = -3

Query: 389 FFFSVITPWVETFIIIRFICAIHNKSSLFIKRLVKFFI---FAFECMYFTVKLGLNVDKL 219
           + F +I P V T++++ F    + +  LFI   V+  I   FA  C   +    LN+++L
Sbjct: 648 YLFHMI-PVVLTYMLVPFPIYFNTQIPLFIHCFVQLLITYFFAIICTMVSELPALNIERL 706

Query: 218 LLKS 207
           LL S
Sbjct: 707 LLAS 710


>Z71186-8|CAA94917.2| 1322|Caenorhabditis elegans Hypothetical protein
            F23D12.2 protein.
          Length = 1322

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 152  RSDGIPTPECSSANPRLENSSEG 220
            +SD  P   C+S+NP  E  S+G
Sbjct: 1280 KSDIAPVDACTSSNPETEKPSDG 1302


>U23179-2|AAK68207.1|  345|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 5 protein.
          Length = 345

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = -3

Query: 314 SSLFIKRLVKFFIFAFECM---YFTVKLGLNVDKLLLK 210
           SS+F+  LV  F F+++C+     T K  L +D+ L K
Sbjct: 65  SSIFLYALVLCFDFSYQCLIPFIVTTKCSLIIDQTLYK 102


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,246,460
Number of Sequences: 27780
Number of extensions: 156701
Number of successful extensions: 434
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)