Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2306
         (400 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr...    27   1.1  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   3.3  
SPAC2F3.11 |||exopolyphosphatase |Schizosaccharomyces pombe|chr ...    25   4.3  
SPAPB1A11.03 |||FMN dependent dehydrogenase|Schizosaccharomyces ...    25   5.7  
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    24   7.6  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      24   10.0 
SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pomb...    24   10.0 

>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 749

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 15/62 (24%), Positives = 26/62 (41%)
 Frame = -1

Query: 307 AANNLSLVXKCAKVDQXDLPVS*NPSKSVPHRHPQTWRNH*XSSCAKTLLATPXCPRQTD 128
           A++  S+    A  +  D P S   +   P   P TW  H  S  +++ +  P   R ++
Sbjct: 351 ASSQFSVPFNAAAENINDTPDSVLANSPTPRHLPYTWSRHSTSGPSRSTVLNPSTSRMSN 410

Query: 127 CT 122
            T
Sbjct: 411 YT 412


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +1

Query: 1    FFFFFFGCQKILHPKIYLERKLSKVI 78
            F  +FFGC  I  P+++L+  L  ++
Sbjct: 1950 FMCWFFGCTLISGPQLFLKNNLKPLL 1975


>SPAC2F3.11 |||exopolyphosphatase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 384

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 70  LKAFFPNKF*DEEFFDNQKKKKK 2
           L +F P  +  +EFFD  K+KKK
Sbjct: 220 LCSFVPKDWVRDEFFDTLKEKKK 242


>SPAPB1A11.03 |||FMN dependent dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 407

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
 Frame = +1

Query: 160 GESLRMNLXSDSAMFAGV---GVEHSWRDFTIQXGHXD 264
           G  +  N+   +  FAG+   G+ H W D      H D
Sbjct: 234 GVEVEENMLEAAKEFAGIVFPGISHDWEDLKFLRKHWD 271


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1526

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 7/33 (21%), Positives = 20/33 (60%)
 Frame = -2

Query: 153 HRSAQDRLIAPSDFFPVNTSAIHKINDL*KLSF 55
           + S  ++++   +  PVN +   ++ND+ +L++
Sbjct: 55  NNSRDEKIVGEDEIDPVNPAKFDRVNDMAELTY 87


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 1   FFFFFFGCQKILHPKIYLERKLSKVINF 84
           FFFFFF   +  H  I++    S V+ F
Sbjct: 80  FFFFFFSHCRRFHIAIFIHPYDSNVVPF 107


>SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 967

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 155 GKESLCA*TXSVIPPCLRVSVWNTLGGI 238
           G E L     ++I PCL  ++W++ G I
Sbjct: 669 GNEPLPDFVVNLIQPCLSPALWDSKGNI 696


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,472,300
Number of Sequences: 5004
Number of extensions: 24971
Number of successful extensions: 58
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)