Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2304
(550 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 119 3e-28
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 111 5e-26
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 69 6e-13
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 60 2e-10
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 30 0.20
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 29 0.45
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 27 1.4
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 1.8
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar... 27 2.4
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 26 4.2
SPBC215.02 |bob1|gim5, gim5|prefoldin subunit 5 |Schizosaccharom... 26 4.2
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 26 4.2
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom... 25 5.6
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|... 25 5.6
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb... 25 5.6
SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 25 5.6
SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2 |Schizos... 25 7.3
SPBC3H7.15 |hhp1||serine/threonine protein kinase Hhp1|Schizosac... 25 9.7
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c... 25 9.7
SPAC959.06c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 9.7
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual 25 9.7
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 25 9.7
SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr ... 25 9.7
SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr 2... 25 9.7
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 119 bits (286), Expect = 3e-28
Identities = 51/74 (68%), Positives = 59/74 (79%)
Frame = +2
Query: 80 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 259
MRE IS+HVGQAG QIGNACWELYCLEHGIQP+G M + D F+TFFSETG GK
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60
Query: 260 HVPRAVFVDLEPTV 301
+VPR+++VDLEP V
Sbjct: 61 YVPRSIYVDLEPNV 74
Score = 83.4 bits (197), Expect = 2e-17
Identities = 41/78 (52%), Positives = 49/78 (62%)
Frame = +3
Query: 192 QTRPSGVETILSTLSSARPELASTYPVLSSSILNLLFVDEVRTGTYRQLFHPEQLITGKE 371
Q G T S + S Y L ++ +D+VRTG YR LFHPEQLITGKE
Sbjct: 43 QNSDGGFSTFFSETGQGKYVPRSIYVDLEPNV-----IDQVRTGPYRDLFHPEQLITGKE 97
Query: 372 DAANNYARGHYTIGKEIV 425
DA+NNYARGHYT+GKE+V
Sbjct: 98 DASNNYARGHYTVGKELV 115
Score = 34.3 bits (75), Expect = 0.012
Identities = 13/20 (65%), Positives = 17/20 (85%)
Frame = +1
Query: 433 VLDXIRKLADQCTGLQGFLI 492
V D IR++AD C+GLQGFL+
Sbjct: 118 VTDKIRRIADNCSGLQGFLV 137
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 111 bits (268), Expect = 5e-26
Identities = 55/79 (69%), Positives = 60/79 (75%), Gaps = 5/79 (6%)
Frame = +2
Query: 80 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTD-----KTIGGGDDSFNTFFSE 244
MRE ISVHVGQAGVQIGNACWELYCLEHGI PDG PT+ K +D F TFFSE
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDG-FPTENSEVHKNNSYLNDGFGTFFSE 59
Query: 245 TGAGKHVPRAVFVDLEPTV 301
TG GK VPR+++VDLEP V
Sbjct: 60 TGQGKFVPRSIYVDLEPNV 78
Score = 79.8 bits (188), Expect = 2e-16
Identities = 30/41 (73%), Positives = 39/41 (95%)
Frame = +3
Query: 303 VDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIV 425
+D+VRTG Y+ LFHPEQ++TGKEDA+NNYARGHYT+GKE++
Sbjct: 79 IDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMI 119
Score = 34.7 bits (76), Expect = 0.009
Identities = 13/20 (65%), Positives = 18/20 (90%)
Frame = +1
Query: 433 VLDXIRKLADQCTGLQGFLI 492
VL+ IR++AD C+GLQGFL+
Sbjct: 122 VLERIRRMADNCSGLQGFLV 141
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 68.5 bits (160), Expect = 6e-13
Identities = 32/73 (43%), Positives = 46/73 (63%)
Frame = +2
Query: 83 RECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKH 262
RE I++ GQ G QIG+ W+ CLEHGI PDG + + T G D + FF ++ ++
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFAT--EGVDRKDVFFYQSDDTRY 60
Query: 263 VPRAVFVDLEPTV 301
+PRA+ +DLEP V
Sbjct: 61 IPRAILIDLEPRV 73
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 60.1 bits (139), Expect = 2e-10
Identities = 30/72 (41%), Positives = 38/72 (52%)
Frame = +2
Query: 80 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 259
MRE + + GQ G Q+G A W EHG+ G T + N +F+E GK
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIY--HGTSEAQHERLNVYFNEAAGGK 58
Query: 260 HVPRAVFVDLEP 295
+VPRAV VDLEP
Sbjct: 59 YVPRAVLVDLEP 70
Score = 43.6 bits (98), Expect = 2e-05
Identities = 17/40 (42%), Positives = 27/40 (67%)
Frame = +3
Query: 303 VDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEI 422
+D V++G + LF P+ +I G+ A N +A+GHYT G E+
Sbjct: 73 MDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAEL 112
Score = 25.8 bits (54), Expect = 4.2
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 433 VLDXIRKLADQCTGLQGF 486
VLD +R+ A+ C LQGF
Sbjct: 116 VLDVVRREAEACDALQGF 133
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 30.3 bits (65), Expect = 0.20
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = +3
Query: 159 STASSLMARCPQTRPSGVETILSTLSSARPELASTYPVLSSSILN 293
ST SSL + ++PS T ST SSA P S+ + SSS+++
Sbjct: 173 STFSSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVS 217
Score = 25.4 bits (53), Expect = 5.6
Identities = 19/69 (27%), Positives = 34/69 (49%)
Frame = +3
Query: 87 SASLYTLAKPESRSVMPAGSFTAWSTASSLMARCPQTRPSGVETILSTLSSARPELASTY 266
S+S + + S S P+ S ++ T+SSL + S + S+LSS+ ++
Sbjct: 206 SSSYLSSSSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASS 265
Query: 267 PVLSSSILN 293
SSSI++
Sbjct: 266 SSSSSSIIS 274
Score = 24.6 bits (51), Expect = 9.7
Identities = 21/66 (31%), Positives = 33/66 (50%)
Frame = +3
Query: 87 SASLYTLAKPESRSVMPAGSFTAWSTASSLMARCPQTRPSGVETILSTLSSARPELASTY 266
++S YT + ES S++ S ++ A P + V S+LSS+ P +ST+
Sbjct: 124 TSSEYTPSSTESSSLLDPSSVSS--------AILPSSTSVEVSISSSSLSSSDPLTSSTF 175
Query: 267 PVLSSS 284
LSSS
Sbjct: 176 SSLSSS 181
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 29.1 bits (62), Expect = 0.45
Identities = 24/72 (33%), Positives = 36/72 (50%)
Frame = +3
Query: 69 LKSKCVSASLYTLAKPESRSVMPAGSFTAWSTASSLMARCPQTRPSGVETILSTLSSARP 248
+K S + +++ P S SV P S T S++SS A PQ+ S ++S +SS
Sbjct: 456 VKQPTASVASSSVSVPSSSSVQPQSS-TPISSSSS--ASSPQSTLSTSSEVVSEVSSTLL 512
Query: 249 ELASTYPVLSSS 284
+S P SSS
Sbjct: 513 SGSSAIPSTSSS 524
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 27.5 bits (58), Expect = 1.4
Identities = 24/69 (34%), Positives = 37/69 (53%)
Frame = +3
Query: 87 SASLYTLAKPESRSVMPAGSFTAWSTASSLMARCPQTRPSGVETILSTLSSARPELASTY 266
S +L T S SV+ S TA +++++L P T S + + ST ++ L S+
Sbjct: 3303 STTLNTSTPITSSSVL--NSSTAITSSTALNTSTPITSSSVLNS--STAITSSSILNSST 3358
Query: 267 PVLSSSILN 293
PV SSS+LN
Sbjct: 3359 PVTSSSVLN 3367
Score = 27.1 bits (57), Expect = 1.8
Identities = 22/69 (31%), Positives = 37/69 (53%)
Frame = +3
Query: 87 SASLYTLAKPESRSVMPAGSFTAWSTASSLMARCPQTRPSGVETILSTLSSARPELASTY 266
S+S+ + P + S + + T +++S L + P T + V T S SS+ L S+
Sbjct: 2378 SSSVLNSSTPITSSTV-VNTSTPITSSSVLNSSTPITSSTVVNTSTSITSSS--VLNSST 2434
Query: 267 PVLSSSILN 293
P+ SSS+LN
Sbjct: 2435 PITSSSVLN 2443
Score = 26.6 bits (56), Expect = 2.4
Identities = 21/69 (30%), Positives = 37/69 (53%)
Frame = +3
Query: 87 SASLYTLAKPESRSVMPAGSFTAWSTASSLMARCPQTRPSGVETILSTLSSARPELASTY 266
S+S+ + P + S + S T +++S L + P T + + T ST ++ L S+
Sbjct: 1934 SSSVLNSSTPITSSTV-VNSSTPITSSSVLNSSTPITSSTALNT--STPITSSSVLNSST 1990
Query: 267 PVLSSSILN 293
P+ SSS+LN
Sbjct: 1991 PITSSSVLN 1999
Score = 26.6 bits (56), Expect = 2.4
Identities = 24/69 (34%), Positives = 37/69 (53%)
Frame = +3
Query: 87 SASLYTLAKPESRSVMPAGSFTAWSTASSLMARCPQTRPSGVETILSTLSSARPELASTY 266
S +L T S SV+ S TA +++S + + P T S + + ST ++ L S+
Sbjct: 3075 STALNTSTPITSSSVL--NSSTAITSSSIVNSSTPITSSSVLNS--STAITSSSILNSST 3130
Query: 267 PVLSSSILN 293
P+ SSSILN
Sbjct: 3131 PITSSSILN 3139
Score = 25.4 bits (53), Expect = 5.6
Identities = 22/69 (31%), Positives = 36/69 (52%)
Frame = +3
Query: 87 SASLYTLAKPESRSVMPAGSFTAWSTASSLMARCPQTRPSGVETILSTLSSARPELASTY 266
S +L T S SV+ S T ++++ L + P T + + T ST ++ L S+
Sbjct: 1875 STALNTSTPITSSSVL--NSSTPITSSTVLNSSTPITSSTALNT--STPITSSSVLNSST 1930
Query: 267 PVLSSSILN 293
P+ SSS+LN
Sbjct: 1931 PITSSSVLN 1939
Score = 25.4 bits (53), Expect = 5.6
Identities = 22/69 (31%), Positives = 36/69 (52%)
Frame = +3
Query: 87 SASLYTLAKPESRSVMPAGSFTAWSTASSLMARCPQTRPSGVETILSTLSSARPELASTY 266
S +L T S SV+ S T ++++ L + P T + + T ST ++ L S+
Sbjct: 2067 STALNTSTPITSSSVL--NSSTPITSSTVLNSSTPITSSTALNT--STPITSSSVLNSST 2122
Query: 267 PVLSSSILN 293
P+ SSS+LN
Sbjct: 2123 PITSSSVLN 2131
Score = 25.0 bits (52), Expect = 7.3
Identities = 22/69 (31%), Positives = 35/69 (50%)
Frame = +3
Query: 87 SASLYTLAKPESRSVMPAGSFTAWSTASSLMARCPQTRPSGVETILSTLSSARPELASTY 266
S L T S SV+ S T ++++ L + P T + + T ST ++ L S+
Sbjct: 939 STGLNTSTPITSSSVL--NSSTPITSSTVLNSSTPITSSTALNT--STPITSSSVLNSST 994
Query: 267 PVLSSSILN 293
P+ SSS+LN
Sbjct: 995 PITSSSVLN 1003
Score = 24.6 bits (51), Expect = 9.7
Identities = 19/50 (38%), Positives = 28/50 (56%)
Frame = +3
Query: 144 SFTAWSTASSLMARCPQTRPSGVETILSTLSSARPELASTYPVLSSSILN 293
S T +++S L + P T S + T ST ++ L S+ P+ SSSILN
Sbjct: 380 SSTPITSSSVLNSSTPITSSSILNT--STPITSSSVLNSSTPITSSSILN 427
Score = 24.6 bits (51), Expect = 9.7
Identities = 17/50 (34%), Positives = 28/50 (56%)
Frame = +3
Query: 144 SFTAWSTASSLMARCPQTRPSGVETILSTLSSARPELASTYPVLSSSILN 293
S T +++S L + P T + + T ST ++ L S+ P+ SSS+LN
Sbjct: 608 SSTPITSSSVLNSSTPITSSTALNT--STPITSSSVLNSSTPITSSSVLN 655
Score = 24.6 bits (51), Expect = 9.7
Identities = 21/69 (30%), Positives = 36/69 (52%)
Frame = +3
Query: 87 SASLYTLAKPESRSVMPAGSFTAWSTASSLMARCPQTRPSGVETILSTLSSARPELASTY 266
S +L T S SV+ S T +++++L P T S + + ST ++ L ++
Sbjct: 663 STALNTSTPITSSSVL--NSSTPITSSTALNTSTPITSSSVLNS--STAITSSTALNTST 718
Query: 267 PVLSSSILN 293
P+ SSS+LN
Sbjct: 719 PITSSSVLN 727
Score = 24.6 bits (51), Expect = 9.7
Identities = 22/69 (31%), Positives = 35/69 (50%)
Frame = +3
Query: 87 SASLYTLAKPESRSVMPAGSFTAWSTASSLMARCPQTRPSGVETILSTLSSARPELASTY 266
S +L T S SV+ S T +++S L P T S + + ST ++ L ++
Sbjct: 975 STALNTSTPITSSSVL--NSSTPITSSSVLNTSTPITSSSVLNS--STAITSSTALNTST 1030
Query: 267 PVLSSSILN 293
P+ SSS+LN
Sbjct: 1031 PITSSSVLN 1039
Score = 24.6 bits (51), Expect = 9.7
Identities = 20/69 (28%), Positives = 37/69 (53%)
Frame = +3
Query: 87 SASLYTLAKPESRSVMPAGSFTAWSTASSLMARCPQTRPSGVETILSTLSSARPELASTY 266
S+S+ + P + S + S T +++++L P T S + + ST ++ L S+
Sbjct: 3182 SSSIVNSSTPITSSSV-LNSSTPITSSTTLNTSTPITSSSVLNS--STAITSSSVLNSST 3238
Query: 267 PVLSSSILN 293
P+ SSS+LN
Sbjct: 3239 PITSSSVLN 3247
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 27.1 bits (57), Expect = 1.8
Identities = 24/97 (24%), Positives = 43/97 (44%)
Frame = +3
Query: 42 NSTFKHRKKLKSKCVSASLYTLAKPESRSVMPAGSFTAWSTASSLMARCPQTRPSGVETI 221
+S+ + + S+S TL S S + S A S++SS + + SG+ +
Sbjct: 85 SSSSQQSSSSSASLTSSSSATLTSSSSASPTSSSSSHALSSSSSSLVASSSS--SGMSSS 142
Query: 222 LSTLSSARPELASTYPVLSSSILNLLFVDEVRTGTYR 332
+ SS+ P +S+Y S + L + + TYR
Sbjct: 143 SLSHSSSVPSSSSSYHSSSMTTSGLSSSASIVSSTYR 179
>SPAC11E3.11c |||guanyl-nucleotide exchange factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 942
Score = 26.6 bits (56), Expect = 2.4
Identities = 34/124 (27%), Positives = 57/124 (45%), Gaps = 4/124 (3%)
Frame = +3
Query: 66 KLKSKCVSASLYTLAKPESRSVMPAGSFTAWSTASSLMARC----PQTRPSGVETILSTL 233
K KSK ++ + P S+SVM S T+ T +S +R R G+ T +S++
Sbjct: 85 KDKSKASMSTNDLPSHPRSQSVMGFSSSTSQLTGTSNSSRTRLNKDMRRDFGM-TSMSSI 143
Query: 234 SSARPELASTYPVLSSSILNLLFVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIG 413
+S+ P S PV S+ +L F D++ G F E +++ + +N A T
Sbjct: 144 TSSTP-TPSQLPVRPST--SLSFFDDIPLG---PSFSAETILSSLSISTSNNAMSKTTPA 197
Query: 414 KEIV 425
+V
Sbjct: 198 PPLV 201
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 25.8 bits (54), Expect = 4.2
Identities = 13/22 (59%), Positives = 13/22 (59%)
Frame = +1
Query: 178 WPDAHRQDHRGWRRFFQHFLQR 243
W A R D R R FQHFLQR
Sbjct: 590 WLAACRSDPRCRRLDFQHFLQR 611
>SPBC215.02 |bob1|gim5, gim5|prefoldin subunit 5
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 154
Score = 25.8 bits (54), Expect = 4.2
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -1
Query: 331 LYVPVRTSSTNSRFKIDEDSTGYVLASSGLAEESVER 221
LYVP + + NS+ +D + YV S+G A E +R
Sbjct: 74 LYVPGKLNLGNSKLLVDIGTGYYVEKSAGEATEYYKR 110
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 25.8 bits (54), Expect = 4.2
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = -3
Query: 482 PCRPVHWSASLRIXSKTKXYDF 417
P +PVHW + I T+ DF
Sbjct: 1403 PLKPVHWISLFEITKSTEQLDF 1424
>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 5.6
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +3
Query: 69 LKSKCVSASLYTLAKPESRSVMPAGSFTAWSTASSLMARCP 191
L+S +L+ P SR++ P S + STASSL P
Sbjct: 170 LRSSMPLVMANSLSPPSSRALKPIHSLSNPSTASSLEPSSP 210
>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 618
Score = 25.4 bits (53), Expect = 5.6
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -3
Query: 290 QDRRRQHGVRACQLRSR*RKC*KNRLHPRWSCL 192
QD++ Q R R R RK +RLHP + C+
Sbjct: 7 QDKKNQEIFRISCQRCRQRKIKCDRLHPCFQCV 39
>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 983
Score = 25.4 bits (53), Expect = 5.6
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 6/83 (7%)
Frame = +3
Query: 51 FKHRKKLKSKCVSASLYTLAK----PESRS--VMPAGSFTAWSTASSLMARCPQTRPSGV 212
F + K KS S LYT+ + PES + A + WST + + P+T +
Sbjct: 648 FVNAIKAKSFEFSTFLYTVIEYCVNPESPEHVIFEADAMELWSTFLMYIQKLPETFTLLI 707
Query: 213 ETILSTLSSARPELASTYPVLSS 281
+L LS A L ++SS
Sbjct: 708 PHLLYHLSQATSTLPFVLMIVSS 730
>SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 398
Score = 25.4 bits (53), Expect = 5.6
Identities = 8/29 (27%), Positives = 17/29 (58%)
Frame = -2
Query: 486 ESLQTGTLVSELADXVQNQNXRFPFQWCS 400
ESL TL+ + +++++ + P +W S
Sbjct: 134 ESLHVFTLLKSIVQGIRDKDLKLPIEWAS 162
>SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 400
Score = 25.0 bits (52), Expect = 7.3
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -1
Query: 133 ITDLDSGLANVYRDALTHFDLSF 65
+T +D GLA YRD TH + +
Sbjct: 146 VTMIDFGLAKKYRDFKTHVHIPY 168
>SPBC3H7.15 |hhp1||serine/threonine protein kinase
Hhp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 365
Score = 24.6 bits (51), Expect = 9.7
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = -1
Query: 187 HLAIRLDAVLQAV-KLPAGITDLDSGLANVYRDALTHFDLSF 65
H I+ D L + K + +D GLA YRD TH + +
Sbjct: 128 HRDIKPDNFLMGIGKRGNQVNIIDFGLAKKYRDHKTHLHIPY 169
>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 649
Score = 24.6 bits (51), Expect = 9.7
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
Frame = +3
Query: 213 ETILSTLSSARPELASTYPVLSSSILNLLF---VDEVRTGTYRQLFHPEQLITG--KEDA 377
ET+L LS R + + + +L LL + + Y + E+ I +E
Sbjct: 545 ETLL--LSVVRGKSGIAFLFFMAIMLKLLLGKAILAITQSRYESMQQREEKINSWERERK 602
Query: 378 ANNYARGHYTIGKEIVXF 431
ANN+ RGH I K+ F
Sbjct: 603 ANNFFRGHIEIDKKTKDF 620
>SPAC959.06c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 225
Score = 24.6 bits (51), Expect = 9.7
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = +3
Query: 114 PESRSVMPAGSFTAWSTASSLMARCPQTRPSGVETILSTLS-SARPELASTYPVLSSSIL 290
P++ G+F +T + L RCP+T P + LS S+R L T +S L
Sbjct: 166 PDNDEFTREGTFE--TTLAKLKNRCPETTPLKLTDCSHMLSPSSRKILLETVDKWLASAL 223
Query: 291 NL 296
N+
Sbjct: 224 NV 225
>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1496
Score = 24.6 bits (51), Expect = 9.7
Identities = 10/28 (35%), Positives = 13/28 (46%)
Frame = +3
Query: 357 ITGKEDAANNYARGHYTIGKEIVXFGFG 440
IT + NN GH T+G + V G
Sbjct: 883 ITDFSRSVNNQRNGHLTVGSDAVCLSLG 910
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 24.6 bits (51), Expect = 9.7
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Frame = +3
Query: 75 SKCVSASLYTLAKPESRSVMPAGSFTAWS---TASSLMARCPQTRPSGVETILSTLSSAR 245
S S+S + + S S +P S T+ S ++SS + +RPS + ++T+SS+
Sbjct: 189 SSSSSSSSSSSSSSSSSSSVPITSSTSSSHSSSSSSSSSSSSSSRPSSSSSFITTMSSS- 247
Query: 246 PELASTYPVLSSS 284
ST V SS
Sbjct: 248 -TFISTVTVTPSS 259
>SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 513
Score = 24.6 bits (51), Expect = 9.7
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +3
Query: 213 ETILSTLSSARPELASTYPVLSSSILNLL 299
++ILS S A+PEL T SSS ++ L
Sbjct: 107 DSILSAKSKAKPELLRTLTSKSSSAVDWL 135
>SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr
2|||Manual
Length = 803
Score = 24.6 bits (51), Expect = 9.7
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = +3
Query: 210 VETILSTLSSARPELASTYPVLSSSILNLLFVDEVRTGTYRQLFHPEQLIT 362
VET+ + L +P A T V SSS + L +++++ +Q ++L T
Sbjct: 741 VETLKTLLQRTKPRDAQTTLVASSSDMRLAAIEQLQKLLAQQSLSIKELKT 791
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,256,037
Number of Sequences: 5004
Number of extensions: 46847
Number of successful extensions: 191
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -