Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2304
(550 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U65429-1|AAB48241.1| 450|Caenorhabditis elegans alpha-tubulin M... 149 1e-36
AF003387-1|AAB54263.2| 450|Caenorhabditis elegans Mechanosensor... 149 1e-36
AB017190-1|BAA32600.1| 450|Caenorhabditis elegans Alpha tubulin... 149 1e-36
D21134-1|BAA22203.1| 449|Caenorhabditis elegans alpha-3 tubulin... 147 4e-36
Z78062-1|CAB01495.1| 447|Caenorhabditis elegans Hypothetical pr... 133 7e-32
U40420-4|AAA81432.2| 456|Caenorhabditis elegans Tubulin, alpha ... 130 9e-31
Z99709-10|CAB16856.1| 448|Caenorhabditis elegans Hypothetical p... 128 2e-30
D14965-1|BAA03610.1| 448|Caenorhabditis elegans alpha-2 tubulin... 128 2e-30
Z81070-8|CAB03001.1| 449|Caenorhabditis elegans Hypothetical pr... 127 5e-30
D16439-1|BAA03909.1| 449|Caenorhabditis elegans alpha-1 tubulin... 127 5e-30
Z37092-12|CAA85463.1| 448|Caenorhabditis elegans Hypothetical p... 126 1e-29
AL023832-2|CAA19476.1| 448|Caenorhabditis elegans Hypothetical ... 126 1e-29
Z81523-9|CAB04246.2| 464|Caenorhabditis elegans Hypothetical pr... 118 2e-27
Z81134-1|CAB03447.1| 444|Caenorhabditis elegans Hypothetical pr... 116 1e-26
Z37140-7|CAA85497.2| 452|Caenorhabditis elegans Hypothetical pr... 101 3e-22
AB017191-1|BAA32601.1| 435|Caenorhabditis elegans alpha tubulin... 77 6e-15
X15242-1|CAA33320.1| 441|Caenorhabditis elegans beta-tubulin pr... 70 1e-12
U70844-1|AAB09092.1| 441|Caenorhabditis elegans Mechanosensory ... 70 1e-12
Z77131-2|CAB00853.4| 444|Caenorhabditis elegans Hypothetical pr... 70 1e-12
Z92803-10|CAB07246.1| 449|Caenorhabditis elegans Hypothetical p... 69 3e-12
Z35597-5|CAA84648.1| 450|Caenorhabditis elegans Hypothetical pr... 68 4e-12
Z46240-1|CAA86310.1| 444|Caenorhabditis elegans Hypothetical pr... 64 8e-11
Z78200-11|CAB01587.2| 426|Caenorhabditis elegans Hypothetical p... 62 3e-10
Z78198-13|CAB01575.2| 426|Caenorhabditis elegans Hypothetical p... 62 3e-10
Z22179-11|CAA80164.1| 444|Caenorhabditis elegans Hypothetical p... 52 4e-07
AF287259-1|AAG24513.1| 444|Caenorhabditis elegans gamma-tubulin... 52 4e-07
AL161712-9|CAC70134.1| 343|Caenorhabditis elegans Hypothetical ... 32 0.31
AC006790-10|AAF60736.1| 371|Caenorhabditis elegans Collagen pro... 29 1.7
U00046-1|AAC47044.3| 2560|Caenorhabditis elegans Temporarily ass... 28 5.1
AB206836-1|BAD91087.1| 2502|Caenorhabditis elegans Ten-1S protein. 28 5.1
AB206835-1|BAD91086.1| 2684|Caenorhabditis elegans Ten-1L protein. 28 5.1
U49829-1|AAA93382.1| 138|Caenorhabditis elegans Hypothetical pr... 27 6.7
U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-... 27 6.7
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-... 27 6.7
AL008869-2|CAC42315.1| 810|Caenorhabditis elegans Hypothetical ... 27 6.7
AB032749-1|BAA92158.1| 810|Caenorhabditis elegans EAT-20B protein. 27 6.7
>U65429-1|AAB48241.1| 450|Caenorhabditis elegans alpha-tubulin
MEC-12 protein.
Length = 450
Score = 149 bits (362), Expect = 1e-36
Identities = 63/74 (85%), Positives = 71/74 (95%)
Frame = +2
Query: 80 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 259
MRE IS+H+GQAGVQIGNACWELYCLEHGIQPDGQMP+DK++GG DDSF+TFFSETG+G+
Sbjct: 1 MREVISIHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKSLGGSDDSFSTFFSETGSGR 60
Query: 260 HVPRAVFVDLEPTV 301
HVPRAV VDLEPTV
Sbjct: 61 HVPRAVMVDLEPTV 74
Score = 88.2 bits (209), Expect = 3e-18
Identities = 37/41 (90%), Positives = 40/41 (97%)
Frame = +3
Query: 303 VDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIV 425
+DE+RTGTYR LFHPEQLITGKEDAANNYARGHYTIGKEI+
Sbjct: 75 IDEIRTGTYRSLFHPEQLITGKEDAANNYARGHYTIGKEII 115
Score = 38.7 bits (86), Expect = 0.003
Identities = 16/21 (76%), Positives = 18/21 (85%)
Frame = +1
Query: 430 LVLDXIRKLADQCTGLQGFLI 492
L LD IR+LAD CTGLQGFL+
Sbjct: 117 LTLDRIRRLADNCTGLQGFLV 137
>AF003387-1|AAB54263.2| 450|Caenorhabditis elegans Mechanosensory
abnormality protein12 protein.
Length = 450
Score = 149 bits (362), Expect = 1e-36
Identities = 63/74 (85%), Positives = 71/74 (95%)
Frame = +2
Query: 80 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 259
MRE IS+H+GQAGVQIGNACWELYCLEHGIQPDGQMP+DK++GG DDSF+TFFSETG+G+
Sbjct: 1 MREVISIHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKSLGGSDDSFSTFFSETGSGR 60
Query: 260 HVPRAVFVDLEPTV 301
HVPRAV VDLEPTV
Sbjct: 61 HVPRAVMVDLEPTV 74
Score = 88.2 bits (209), Expect = 3e-18
Identities = 37/41 (90%), Positives = 40/41 (97%)
Frame = +3
Query: 303 VDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIV 425
+DE+RTGTYR LFHPEQLITGKEDAANNYARGHYTIGKEI+
Sbjct: 75 IDEIRTGTYRSLFHPEQLITGKEDAANNYARGHYTIGKEII 115
Score = 38.7 bits (86), Expect = 0.003
Identities = 16/21 (76%), Positives = 18/21 (85%)
Frame = +1
Query: 430 LVLDXIRKLADQCTGLQGFLI 492
L LD IR+LAD CTGLQGFL+
Sbjct: 117 LTLDRIRRLADNCTGLQGFLV 137
>AB017190-1|BAA32600.1| 450|Caenorhabditis elegans Alpha tubulin
(tba-3) protein.
Length = 450
Score = 149 bits (362), Expect = 1e-36
Identities = 63/74 (85%), Positives = 71/74 (95%)
Frame = +2
Query: 80 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 259
MRE IS+H+GQAGVQIGNACWELYCLEHGIQPDGQMP+DK++GG DDSF+TFFSETG+G+
Sbjct: 1 MREVISIHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKSLGGSDDSFSTFFSETGSGR 60
Query: 260 HVPRAVFVDLEPTV 301
HVPRAV VDLEPTV
Sbjct: 61 HVPRAVMVDLEPTV 74
Score = 88.2 bits (209), Expect = 3e-18
Identities = 37/41 (90%), Positives = 40/41 (97%)
Frame = +3
Query: 303 VDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIV 425
+DE+RTGTYR LFHPEQLITGKEDAANNYARGHYTIGKEI+
Sbjct: 75 IDEIRTGTYRSLFHPEQLITGKEDAANNYARGHYTIGKEII 115
Score = 38.7 bits (86), Expect = 0.003
Identities = 16/21 (76%), Positives = 18/21 (85%)
Frame = +1
Query: 430 LVLDXIRKLADQCTGLQGFLI 492
L LD IR+LAD CTGLQGFL+
Sbjct: 117 LTLDRIRRLADNCTGLQGFLV 137
>D21134-1|BAA22203.1| 449|Caenorhabditis elegans alpha-3 tubulin
protein.
Length = 449
Score = 147 bits (357), Expect = 4e-36
Identities = 62/73 (84%), Positives = 70/73 (95%)
Frame = +2
Query: 83 RECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKH 262
RE IS+H+GQAGVQIGNACWELYCLEHGIQPDGQMP+DK++GG DDSF+TFFSETG+G+H
Sbjct: 1 REVISIHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKSLGGSDDSFSTFFSETGSGRH 60
Query: 263 VPRAVFVDLEPTV 301
VPRAV VDLEPTV
Sbjct: 61 VPRAVMVDLEPTV 73
Score = 88.2 bits (209), Expect = 3e-18
Identities = 37/41 (90%), Positives = 40/41 (97%)
Frame = +3
Query: 303 VDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIV 425
+DE+RTGTYR LFHPEQLITGKEDAANNYARGHYTIGKEI+
Sbjct: 74 IDEIRTGTYRSLFHPEQLITGKEDAANNYARGHYTIGKEII 114
Score = 38.7 bits (86), Expect = 0.003
Identities = 16/21 (76%), Positives = 18/21 (85%)
Frame = +1
Query: 430 LVLDXIRKLADQCTGLQGFLI 492
L LD IR+LAD CTGLQGFL+
Sbjct: 116 LTLDRIRRLADNCTGLQGFLV 136
>Z78062-1|CAB01495.1| 447|Caenorhabditis elegans Hypothetical
protein F16D3.1 protein.
Length = 447
Score = 133 bits (322), Expect = 7e-32
Identities = 57/74 (77%), Positives = 64/74 (86%)
Frame = +2
Query: 80 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 259
MRE +S+H+GQAGVQIGNACWELYCLEHGI PDG MP D + G D S+NTFFSET +GK
Sbjct: 1 MREIVSIHIGQAGVQIGNACWELYCLEHGITPDGLMPDDTSYGVEDQSYNTFFSETPSGK 60
Query: 260 HVPRAVFVDLEPTV 301
HVPRA+FVDLEPTV
Sbjct: 61 HVPRAIFVDLEPTV 74
Score = 84.2 bits (199), Expect = 6e-17
Identities = 35/41 (85%), Positives = 40/41 (97%)
Frame = +3
Query: 303 VDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIV 425
+DEVRTGTY +LFHPEQLI+GKEDAANNYARGHYTIGKE++
Sbjct: 75 IDEVRTGTYAKLFHPEQLISGKEDAANNYARGHYTIGKELI 115
Score = 30.7 bits (66), Expect = 0.72
Identities = 11/21 (52%), Positives = 17/21 (80%)
Frame = +1
Query: 430 LVLDXIRKLADQCTGLQGFLI 492
+V+D +R+L ++C LQGFLI
Sbjct: 117 VVMDRVRRLTERCQSLQGFLI 137
>U40420-4|AAA81432.2| 456|Caenorhabditis elegans Tubulin, alpha
protein 9 protein.
Length = 456
Score = 130 bits (313), Expect = 9e-31
Identities = 56/74 (75%), Positives = 64/74 (86%)
Frame = +2
Query: 77 KMRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAG 256
+ RE IS+HVGQAGVQ+GNACWELYCLEHGIQPDG + + ++G DDSFNTFFSET AG
Sbjct: 5 RSREVISIHVGQAGVQMGNACWELYCLEHGIQPDGMINEEDSLGVDDDSFNTFFSETMAG 64
Query: 257 KHVPRAVFVDLEPT 298
KHVPRA+ VDLEPT
Sbjct: 65 KHVPRAIMVDLEPT 78
Score = 85.8 bits (203), Expect = 2e-17
Identities = 35/41 (85%), Positives = 40/41 (97%)
Frame = +3
Query: 303 VDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIV 425
+DE+RTGTY+ LFHPEQL+TGKEDAANNYARGHYTIGKEI+
Sbjct: 80 IDEIRTGTYKTLFHPEQLLTGKEDAANNYARGHYTIGKEII 120
Score = 32.3 bits (70), Expect = 0.24
Identities = 11/21 (52%), Positives = 17/21 (80%)
Frame = +1
Query: 430 LVLDXIRKLADQCTGLQGFLI 492
+V+D +R+L + C GLQGFL+
Sbjct: 122 VVMDRVRRLVENCRGLQGFLV 142
>Z99709-10|CAB16856.1| 448|Caenorhabditis elegans Hypothetical
protein C47B2.3 protein.
Length = 448
Score = 128 bits (310), Expect = 2e-30
Identities = 57/74 (77%), Positives = 65/74 (87%)
Frame = +2
Query: 80 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 259
MRE IS+HVGQAGVQIGNACWELYCLEHGIQPDG MPT T G +SF TFFS+TG+G+
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPTQSTNEG--ESFTTFFSDTGSGR 58
Query: 260 HVPRAVFVDLEPTV 301
+VPR++FVDLEPTV
Sbjct: 59 YVPRSIFVDLEPTV 72
Score = 85.8 bits (203), Expect = 2e-17
Identities = 34/41 (82%), Positives = 41/41 (100%)
Frame = +3
Query: 303 VDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIV 425
VDE+RTGTY++LFHPEQ+ITGKEDAANNYARGHYT+GKE++
Sbjct: 73 VDEIRTGTYKKLFHPEQMITGKEDAANNYARGHYTVGKELI 113
Score = 35.5 bits (78), Expect = 0.025
Identities = 14/20 (70%), Positives = 17/20 (85%)
Frame = +1
Query: 433 VLDXIRKLADQCTGLQGFLI 492
VLD IR+LAD C+GLQGF +
Sbjct: 116 VLDRIRRLADNCSGLQGFFV 135
>D14965-1|BAA03610.1| 448|Caenorhabditis elegans alpha-2 tubulin
protein.
Length = 448
Score = 128 bits (310), Expect = 2e-30
Identities = 57/74 (77%), Positives = 65/74 (87%)
Frame = +2
Query: 80 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 259
MRE IS+HVGQAGVQIGNACWELYCLEHGIQPDG MPT T G +SF TFFS+TG+G+
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPTQSTNEG--ESFTTFFSDTGSGR 58
Query: 260 HVPRAVFVDLEPTV 301
+VPR++FVDLEPTV
Sbjct: 59 YVPRSIFVDLEPTV 72
Score = 85.8 bits (203), Expect = 2e-17
Identities = 34/41 (82%), Positives = 41/41 (100%)
Frame = +3
Query: 303 VDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIV 425
VDE+RTGTY++LFHPEQ+ITGKEDAANNYARGHYT+GKE++
Sbjct: 73 VDEIRTGTYKKLFHPEQMITGKEDAANNYARGHYTVGKELI 113
Score = 35.5 bits (78), Expect = 0.025
Identities = 14/20 (70%), Positives = 17/20 (85%)
Frame = +1
Query: 433 VLDXIRKLADQCTGLQGFLI 492
VLD IR+LAD C+GLQGF +
Sbjct: 116 VLDRIRRLADNCSGLQGFFV 135
>Z81070-8|CAB03001.1| 449|Caenorhabditis elegans Hypothetical
protein F26E4.8 protein.
Length = 449
Score = 127 bits (307), Expect = 5e-30
Identities = 56/74 (75%), Positives = 65/74 (87%)
Frame = +2
Query: 80 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 259
MRE IS+HVGQAGVQIGNACWELYCLEHGIQPDG MP+D+ G +SF TFFS+TG G+
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPSDQQADG--ESFTTFFSDTGNGR 58
Query: 260 HVPRAVFVDLEPTV 301
+VPR++FVDLEPTV
Sbjct: 59 YVPRSIFVDLEPTV 72
Score = 85.8 bits (203), Expect = 2e-17
Identities = 34/41 (82%), Positives = 41/41 (100%)
Frame = +3
Query: 303 VDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIV 425
VDE+RTGTY++LFHPEQ+ITGKEDAANNYARGHYT+GKE++
Sbjct: 73 VDEIRTGTYKKLFHPEQMITGKEDAANNYARGHYTVGKELI 113
Score = 35.5 bits (78), Expect = 0.025
Identities = 14/20 (70%), Positives = 17/20 (85%)
Frame = +1
Query: 433 VLDXIRKLADQCTGLQGFLI 492
VLD IR+LAD C+GLQGF +
Sbjct: 116 VLDRIRRLADNCSGLQGFFV 135
>D16439-1|BAA03909.1| 449|Caenorhabditis elegans alpha-1 tubulin
protein.
Length = 449
Score = 127 bits (307), Expect = 5e-30
Identities = 56/74 (75%), Positives = 65/74 (87%)
Frame = +2
Query: 80 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 259
MRE IS+HVGQAGVQIGNACWELYCLEHGIQPDG MP+D+ G +SF TFFS+TG G+
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPSDQQADG--ESFTTFFSDTGNGR 58
Query: 260 HVPRAVFVDLEPTV 301
+VPR++FVDLEPTV
Sbjct: 59 YVPRSIFVDLEPTV 72
Score = 85.8 bits (203), Expect = 2e-17
Identities = 34/41 (82%), Positives = 41/41 (100%)
Frame = +3
Query: 303 VDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIV 425
VDE+RTGTY++LFHPEQ+ITGKEDAANNYARGHYT+GKE++
Sbjct: 73 VDEIRTGTYKKLFHPEQMITGKEDAANNYARGHYTVGKELI 113
Score = 35.5 bits (78), Expect = 0.025
Identities = 14/20 (70%), Positives = 17/20 (85%)
Frame = +1
Query: 433 VLDXIRKLADQCTGLQGFLI 492
VLD IR+LAD C+GLQGF +
Sbjct: 116 VLDRIRRLADNCSGLQGFFV 135
>Z37092-12|CAA85463.1| 448|Caenorhabditis elegans Hypothetical
protein F44F4.11 protein.
Length = 448
Score = 126 bits (304), Expect = 1e-29
Identities = 56/74 (75%), Positives = 65/74 (87%)
Frame = +2
Query: 80 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 259
MRE IS+HVGQAGVQIGNACWELYCLEHGIQPDG MP+++ GG SF TFFS+TG G+
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPSEQQNEGG--SFTTFFSDTGNGR 58
Query: 260 HVPRAVFVDLEPTV 301
+VPR++FVDLEPTV
Sbjct: 59 YVPRSIFVDLEPTV 72
Score = 83.8 bits (198), Expect = 7e-17
Identities = 33/41 (80%), Positives = 40/41 (97%)
Frame = +3
Query: 303 VDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIV 425
VDE+RTG Y++LFHPEQ+ITGKEDAANNYARGHYT+GKE++
Sbjct: 73 VDEIRTGNYKKLFHPEQMITGKEDAANNYARGHYTVGKELI 113
Score = 33.9 bits (74), Expect = 0.077
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = +1
Query: 436 LDXIRKLADQCTGLQGFLI 492
LD IR+LAD C+GLQGF +
Sbjct: 117 LDRIRRLADNCSGLQGFFV 135
>AL023832-2|CAA19476.1| 448|Caenorhabditis elegans Hypothetical
protein F44F4.11 protein.
Length = 448
Score = 126 bits (304), Expect = 1e-29
Identities = 56/74 (75%), Positives = 65/74 (87%)
Frame = +2
Query: 80 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 259
MRE IS+HVGQAGVQIGNACWELYCLEHGIQPDG MP+++ GG SF TFFS+TG G+
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPSEQQNEGG--SFTTFFSDTGNGR 58
Query: 260 HVPRAVFVDLEPTV 301
+VPR++FVDLEPTV
Sbjct: 59 YVPRSIFVDLEPTV 72
Score = 83.8 bits (198), Expect = 7e-17
Identities = 33/41 (80%), Positives = 40/41 (97%)
Frame = +3
Query: 303 VDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIV 425
VDE+RTG Y++LFHPEQ+ITGKEDAANNYARGHYT+GKE++
Sbjct: 73 VDEIRTGNYKKLFHPEQMITGKEDAANNYARGHYTVGKELI 113
Score = 33.9 bits (74), Expect = 0.077
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = +1
Query: 436 LDXIRKLADQCTGLQGFLI 492
LD IR+LAD C+GLQGF +
Sbjct: 117 LDRIRRLADNCSGLQGFFV 135
>Z81523-9|CAB04246.2| 464|Caenorhabditis elegans Hypothetical
protein F32H2.9 protein.
Length = 464
Score = 118 bits (285), Expect = 2e-27
Identities = 52/73 (71%), Positives = 58/73 (79%)
Frame = +2
Query: 83 RECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKH 262
RE IS+HVGQAGVQIGNACWEL+CLEHGIQPDG D T ++ NTFF+ET GKH
Sbjct: 8 REVISIHVGQAGVQIGNACWELFCLEHGIQPDGYHVEDDTYDEETETINTFFAETAGGKH 67
Query: 263 VPRAVFVDLEPTV 301
VPR +FVDLEPTV
Sbjct: 68 VPRCLFVDLEPTV 80
Score = 77.4 bits (182), Expect = 6e-15
Identities = 33/41 (80%), Positives = 38/41 (92%)
Frame = +3
Query: 303 VDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIV 425
VDEVRTGTYR LFHPEQL++GKEDAAN YARG YTIG+E++
Sbjct: 81 VDEVRTGTYRSLFHPEQLLSGKEDAANCYARGRYTIGREMI 121
Score = 32.7 bits (71), Expect = 0.18
Identities = 12/26 (46%), Positives = 20/26 (76%)
Frame = +1
Query: 415 RKSXILVLDXIRKLADQCTGLQGFLI 492
R+ +V+D +++LA+ C GLQGF+I
Sbjct: 118 REMIDVVMDRVKRLAENCNGLQGFVI 143
>Z81134-1|CAB03447.1| 444|Caenorhabditis elegans Hypothetical
protein T28D6.2 protein.
Length = 444
Score = 116 bits (278), Expect = 1e-26
Identities = 53/74 (71%), Positives = 58/74 (78%)
Frame = +2
Query: 80 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 259
MRE IS+HVGQAGVQIGNACWELYCLEHGI PDG T G S TFFS+TG G+
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGILPDG---TSMEPDGNSGSLGTFFSDTGYGR 57
Query: 260 HVPRAVFVDLEPTV 301
HVPR++FVDLEPTV
Sbjct: 58 HVPRSIFVDLEPTV 71
Score = 83.8 bits (198), Expect = 7e-17
Identities = 33/41 (80%), Positives = 40/41 (97%)
Frame = +3
Query: 303 VDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIV 425
VDE+RTG Y++LFHPEQ++TGKEDAANNYARGHYT+GKEI+
Sbjct: 72 VDEIRTGAYKKLFHPEQMLTGKEDAANNYARGHYTVGKEII 112
Score = 31.1 bits (67), Expect = 0.55
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +1
Query: 436 LDXIRKLADQCTGLQGFLI 492
LD IR+LA+ C GLQGF +
Sbjct: 116 LDRIRRLANNCEGLQGFFV 134
>Z37140-7|CAA85497.2| 452|Caenorhabditis elegans Hypothetical
protein ZK899.4 protein.
Length = 452
Score = 101 bits (242), Expect = 3e-22
Identities = 43/73 (58%), Positives = 54/73 (73%)
Frame = +2
Query: 83 RECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKH 262
REC+S+H+GQAG QIGNACWELYC+EHG+ G + ++ S FFSE+ GKH
Sbjct: 6 RECVSIHIGQAGAQIGNACWELYCIEHGLDEAGFLKEEEK-NKKQQSLQAFFSESMNGKH 64
Query: 263 VPRAVFVDLEPTV 301
VPRA++VDLEPTV
Sbjct: 65 VPRAIYVDLEPTV 77
Score = 75.8 bits (178), Expect = 2e-14
Identities = 30/41 (73%), Positives = 36/41 (87%)
Frame = +3
Query: 303 VDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIV 425
+DE+R G Y LFHP+Q+I GKEDAANNYARGHYTIGKE++
Sbjct: 78 LDEIRNGVYGNLFHPDQIINGKEDAANNYARGHYTIGKELI 118
Score = 32.3 bits (70), Expect = 0.24
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = +1
Query: 430 LVLDXIRKLADQCTGLQGFLI 492
+VLD IRK + C GLQGFL+
Sbjct: 120 VVLDRIRKQTENCEGLQGFLV 140
>AB017191-1|BAA32601.1| 435|Caenorhabditis elegans alpha tubulin
(tba-6) protein.
Length = 435
Score = 77.4 bits (182), Expect = 6e-15
Identities = 33/41 (80%), Positives = 38/41 (92%)
Frame = +3
Query: 303 VDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIV 425
VDEVRTGTYR LFHPEQL++GKEDAAN YARG YTIG+E++
Sbjct: 53 VDEVRTGTYRSLFHPEQLLSGKEDAANCYARGRYTIGREMI 93
Score = 74.9 bits (176), Expect = 3e-14
Identities = 32/52 (61%), Positives = 38/52 (73%)
Frame = +2
Query: 146 LYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTV 301
++CLEHGIQPDG D T ++ NTFF+ET GKHVPR +FVDLEPTV
Sbjct: 1 MFCLEHGIQPDGYHVEDDTYDEETETINTFFAETAGGKHVPRCLFVDLEPTV 52
Score = 32.7 bits (71), Expect = 0.18
Identities = 12/26 (46%), Positives = 20/26 (76%)
Frame = +1
Query: 415 RKSXILVLDXIRKLADQCTGLQGFLI 492
R+ +V+D +++LA+ C GLQGF+I
Sbjct: 90 REMIDVVMDRVKRLAENCNGLQGFVI 115
>X15242-1|CAA33320.1| 441|Caenorhabditis elegans beta-tubulin
protein.
Length = 441
Score = 70.1 bits (164), Expect = 1e-12
Identities = 33/72 (45%), Positives = 44/72 (61%)
Frame = +2
Query: 80 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 259
MRE + + GQ G QIG+ WE+ EHGI P GQ D + + N +++E G+ K
Sbjct: 1 MREIVHIQAGQCGNQIGSKFWEVISDEHGIDPSGQYVGDSDL--QLERINVYYNEAGSNK 58
Query: 260 HVPRAVFVDLEP 295
+VPRAV VDLEP
Sbjct: 59 YVPRAVLVDLEP 70
Score = 50.8 bits (116), Expect = 6e-07
Identities = 20/41 (48%), Positives = 29/41 (70%)
Frame = +3
Query: 303 VDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIV 425
+D VR+G + QLF P+ + G+ A NN+A+GHYT G E+V
Sbjct: 73 MDSVRSGPFGQLFRPDNYVFGQSGAGNNWAKGHYTEGAELV 113
>U70844-1|AAB09092.1| 441|Caenorhabditis elegans Mechanosensory
abnormality protein7 protein.
Length = 441
Score = 70.1 bits (164), Expect = 1e-12
Identities = 33/72 (45%), Positives = 44/72 (61%)
Frame = +2
Query: 80 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 259
MRE + + GQ G QIG+ WE+ EHGI P GQ D + + N +++E G+ K
Sbjct: 1 MREIVHIQAGQCGNQIGSKFWEVISDEHGIDPSGQYVGDSDL--QLERINVYYNEAGSNK 58
Query: 260 HVPRAVFVDLEP 295
+VPRAV VDLEP
Sbjct: 59 YVPRAVLVDLEP 70
Score = 50.8 bits (116), Expect = 6e-07
Identities = 20/41 (48%), Positives = 29/41 (70%)
Frame = +3
Query: 303 VDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIV 425
+D VR+G + QLF P+ + G+ A NN+A+GHYT G E+V
Sbjct: 73 MDSVRSGPFGQLFRPDNYVFGQSGAGNNWAKGHYTEGAELV 113
>Z77131-2|CAB00853.4| 444|Caenorhabditis elegans Hypothetical
protein C54C6.2 protein.
Length = 444
Score = 69.7 bits (163), Expect = 1e-12
Identities = 34/72 (47%), Positives = 43/72 (59%)
Frame = +2
Query: 80 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 259
MRE + V GQ G QIG WE+ EHGIQPDG + + + N +++E GK
Sbjct: 1 MREIVHVQAGQCGNQIGAKFWEVISDEHGIQPDGTYKGESDL--QLERINVYYNEANGGK 58
Query: 260 HVPRAVFVDLEP 295
+VPRAV VDLEP
Sbjct: 59 YVPRAVLVDLEP 70
Score = 51.2 bits (117), Expect = 5e-07
Identities = 20/41 (48%), Positives = 29/41 (70%)
Frame = +3
Query: 303 VDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIV 425
+D VR+G + QLF P+ + G+ A NN+A+GHYT G E+V
Sbjct: 73 MDSVRSGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELV 113
>Z92803-10|CAB07246.1| 449|Caenorhabditis elegans Hypothetical
protein K01G5.7 protein.
Length = 449
Score = 68.5 bits (160), Expect = 3e-12
Identities = 33/72 (45%), Positives = 44/72 (61%)
Frame = +2
Query: 80 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 259
MRE + V GQ G QIG+ WE+ EHGIQPDG + + + + +++E GK
Sbjct: 1 MREIVHVQAGQCGNQIGSKFWEVISDEHGIQPDGTFKGESDL--QLERIDVYYNEANNGK 58
Query: 260 HVPRAVFVDLEP 295
+VPRAV VDLEP
Sbjct: 59 YVPRAVLVDLEP 70
Score = 51.2 bits (117), Expect = 5e-07
Identities = 20/41 (48%), Positives = 29/41 (70%)
Frame = +3
Query: 303 VDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIV 425
+D VR+G + QLF P+ + G+ A NN+A+GHYT G E+V
Sbjct: 73 MDSVRSGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELV 113
>Z35597-5|CAA84648.1| 450|Caenorhabditis elegans Hypothetical
protein C36E8.5 protein.
Length = 450
Score = 68.1 bits (159), Expect = 4e-12
Identities = 33/72 (45%), Positives = 44/72 (61%)
Frame = +2
Query: 80 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 259
MRE + V GQ G QIG+ WE+ EHGIQPDG + + + + +++E GK
Sbjct: 1 MREIVHVQAGQCGNQIGSKFWEVISDEHGIQPDGTFKGETDL--QLERIDVYYNEANNGK 58
Query: 260 HVPRAVFVDLEP 295
+VPRAV VDLEP
Sbjct: 59 YVPRAVLVDLEP 70
Score = 51.2 bits (117), Expect = 5e-07
Identities = 20/41 (48%), Positives = 29/41 (70%)
Frame = +3
Query: 303 VDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIV 425
+D VR+G + QLF P+ + G+ A NN+A+GHYT G E+V
Sbjct: 73 MDSVRSGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELV 113
>Z46240-1|CAA86310.1| 444|Caenorhabditis elegans Hypothetical
protein B0272.1 protein.
Length = 444
Score = 63.7 bits (148), Expect = 8e-11
Identities = 31/72 (43%), Positives = 40/72 (55%)
Frame = +2
Query: 80 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 259
MRE + + GQ G QIG WE+ EHGI P G D + + N +++E GK
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGAYNGDSDL--QLERINVYYNEASGGK 58
Query: 260 HVPRAVFVDLEP 295
+VPRA VDLEP
Sbjct: 59 YVPRACLVDLEP 70
Score = 50.8 bits (116), Expect = 6e-07
Identities = 20/41 (48%), Positives = 28/41 (68%)
Frame = +3
Query: 303 VDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIV 425
+D VR G + QLF P+ + G+ A NN+A+GHYT G E+V
Sbjct: 73 MDSVRAGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELV 113
>Z78200-11|CAB01587.2| 426|Caenorhabditis elegans Hypothetical
protein T04H1.9 protein.
Length = 426
Score = 62.1 bits (144), Expect = 3e-10
Identities = 31/72 (43%), Positives = 41/72 (56%)
Frame = +2
Query: 80 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 259
M+E I+V VGQ G QIG WE EHG+Q DG D G + +++ E K
Sbjct: 1 MKEIINVQVGQCGNQIGAKFWEYISEEHGLQTDGTYKGDN--GSQLERITSYYKEMEGRK 58
Query: 260 HVPRAVFVDLEP 295
+VPRA+ VDL+P
Sbjct: 59 YVPRAILVDLDP 70
Score = 43.6 bits (98), Expect = 1e-04
Identities = 18/41 (43%), Positives = 28/41 (68%)
Frame = +3
Query: 303 VDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIV 425
++ VR+ Y +LF PE ++G+ A NN++RG+Y G EIV
Sbjct: 73 INYVRSTQYGKLFDPENAVSGESGAGNNWSRGYYEQGAEIV 113
>Z78198-13|CAB01575.2| 426|Caenorhabditis elegans Hypothetical
protein T04H1.9 protein.
Length = 426
Score = 62.1 bits (144), Expect = 3e-10
Identities = 31/72 (43%), Positives = 41/72 (56%)
Frame = +2
Query: 80 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 259
M+E I+V VGQ G QIG WE EHG+Q DG D G + +++ E K
Sbjct: 1 MKEIINVQVGQCGNQIGAKFWEYISEEHGLQTDGTYKGDN--GSQLERITSYYKEMEGRK 58
Query: 260 HVPRAVFVDLEP 295
+VPRA+ VDL+P
Sbjct: 59 YVPRAILVDLDP 70
Score = 43.6 bits (98), Expect = 1e-04
Identities = 18/41 (43%), Positives = 28/41 (68%)
Frame = +3
Query: 303 VDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIV 425
++ VR+ Y +LF PE ++G+ A NN++RG+Y G EIV
Sbjct: 73 INYVRSTQYGKLFDPENAVSGESGAGNNWSRGYYEQGAEIV 113
>Z22179-11|CAA80164.1| 444|Caenorhabditis elegans Hypothetical
protein F58A4.8 protein.
Length = 444
Score = 51.6 bits (118), Expect = 4e-07
Identities = 28/70 (40%), Positives = 38/70 (54%)
Frame = +2
Query: 92 ISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHVPR 271
++VHVGQ G Q+ A W+ EHGI GQ + + +D + F + +VPR
Sbjct: 8 MTVHVGQCGNQLAQAFWKSMVDEHGINERGQTTHEDDM---NDKKDLLFYQADDDHYVPR 64
Query: 272 AVFVDLEPTV 301
AV VDLEP V
Sbjct: 65 AVLVDLEPRV 74
>AF287259-1|AAG24513.1| 444|Caenorhabditis elegans gamma-tubulin
protein.
Length = 444
Score = 51.6 bits (118), Expect = 4e-07
Identities = 28/70 (40%), Positives = 38/70 (54%)
Frame = +2
Query: 92 ISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHVPR 271
++VHVGQ G Q+ A W+ EHGI GQ + + +D + F + +VPR
Sbjct: 8 MTVHVGQCGNQLAQAFWKSMVDEHGINERGQTTHEDDM---NDKKDLLFYQADDDHYVPR 64
Query: 272 AVFVDLEPTV 301
AV VDLEP V
Sbjct: 65 AVLVDLEPRV 74
>AL161712-9|CAC70134.1| 343|Caenorhabditis elegans Hypothetical
protein Y66D12A.12 protein.
Length = 343
Score = 31.9 bits (69), Expect = 0.31
Identities = 18/52 (34%), Positives = 31/52 (59%)
Frame = +3
Query: 108 AKPESRSVMPAGSFTAWSTASSLMARCPQTRPSGVETILSTLSSARPELAST 263
A P MP+ S + S++SS M + P+ PS ++T+L+++ + E AST
Sbjct: 189 ATPALLPFMPSSSTFSASSSSSEMEQTPE--PSSLDTVLTSMMNNNEEAAST 238
>AC006790-10|AAF60736.1| 371|Caenorhabditis elegans Collagen
protein 71 protein.
Length = 371
Score = 29.5 bits (63), Expect = 1.7
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = -2
Query: 315 GPHQQTVGSRSTKTARGTCLPAP 247
GPH T GS S T CLP P
Sbjct: 154 GPHTATTGSDSEGTCHDCCLPGP 176
>U00046-1|AAC47044.3| 2560|Caenorhabditis elegans Temporarily
assigned gene nameprotein 152, isoform a protein.
Length = 2560
Score = 27.9 bits (59), Expect = 5.1
Identities = 16/59 (27%), Positives = 24/59 (40%)
Frame = -2
Query: 333 VCMCQCGPHQQTVGSRSTKTARGTCLPAPVSLKKVLKESSPPPMVLSVGIWPSGWMPCS 157
V Q P + + S+KT + P P S KK P++ +V + PCS
Sbjct: 451 VPQAQSPPRRGQEPTESSKTRKAQVKPTPTSEKKKESRELQKPIIATVQVPTESSHPCS 509
>AB206836-1|BAD91087.1| 2502|Caenorhabditis elegans Ten-1S protein.
Length = 2502
Score = 27.9 bits (59), Expect = 5.1
Identities = 16/59 (27%), Positives = 24/59 (40%)
Frame = -2
Query: 333 VCMCQCGPHQQTVGSRSTKTARGTCLPAPVSLKKVLKESSPPPMVLSVGIWPSGWMPCS 157
V Q P + + S+KT + P P S KK P++ +V + PCS
Sbjct: 393 VPQAQSPPRRGQEPTESSKTRKAQVKPTPTSEKKKESRELQKPIIATVQVPTESSHPCS 451
>AB206835-1|BAD91086.1| 2684|Caenorhabditis elegans Ten-1L protein.
Length = 2684
Score = 27.9 bits (59), Expect = 5.1
Identities = 16/59 (27%), Positives = 24/59 (40%)
Frame = -2
Query: 333 VCMCQCGPHQQTVGSRSTKTARGTCLPAPVSLKKVLKESSPPPMVLSVGIWPSGWMPCS 157
V Q P + + S+KT + P P S KK P++ +V + PCS
Sbjct: 575 VPQAQSPPRRGQEPTESSKTRKAQVKPTPTSEKKKESRELQKPIIATVQVPTESSHPCS 633
>U49829-1|AAA93382.1| 138|Caenorhabditis elegans Hypothetical
protein F27D9.3 protein.
Length = 138
Score = 27.5 bits (58), Expect = 6.7
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -2
Query: 333 VCMCQCGPHQQTVGSRSTKTARGTCLPAPVSLKK 232
V + CGP + G R+ T+R LP P S+ K
Sbjct: 3 VSVRMCGPVGKPSGPRALLTSRAFSLPFPASMTK 36
>U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform b protein.
Length = 1169
Score = 27.5 bits (58), Expect = 6.7
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Frame = -2
Query: 330 CMCQCGPHQQTVG--SRSTKTARGTCLPAPVSLKKVLKESSPPPMVLSV 190
C+C G G + T T+R T LP+ + + ++ PP SV
Sbjct: 646 CLCPAGQQPSNSGRCEKFTTTSRQTTLPSTTTTQGTTTTTTAPPPTTSV 694
>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform a protein.
Length = 1876
Score = 27.5 bits (58), Expect = 6.7
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Frame = -2
Query: 330 CMCQCGPHQQTVG--SRSTKTARGTCLPAPVSLKKVLKESSPPPMVLSV 190
C+C G G + T T+R T LP+ + + ++ PP SV
Sbjct: 743 CLCPAGQQPSNSGRCEKFTTTSRQTTLPSTTTTQGTTTTTTAPPPTTSV 791
>AL008869-2|CAC42315.1| 810|Caenorhabditis elegans Hypothetical
protein H30A04.1b protein.
Length = 810
Score = 27.5 bits (58), Expect = 6.7
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -2
Query: 513 TSTEGVXDQESLQTGTLVSELADXVQNQN 427
TSTEGV D+ES + T V E + V +N
Sbjct: 694 TSTEGVVDEESDEERTTVPESNEEVVTKN 722
>AB032749-1|BAA92158.1| 810|Caenorhabditis elegans EAT-20B protein.
Length = 810
Score = 27.5 bits (58), Expect = 6.7
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -2
Query: 513 TSTEGVXDQESLQTGTLVSELADXVQNQN 427
TSTEGV D+ES + T V E + V +N
Sbjct: 694 TSTEGVVDEESDEERTTVPESNEEVVTKN 722
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,795,268
Number of Sequences: 27780
Number of extensions: 280931
Number of successful extensions: 807
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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