Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2300
(750 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha... 77 4e-15
SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo... 57 3e-09
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr... 28 1.2
SPAC2C4.03c |smd2|cwf9|Sm snRNP core protein Smd2|Schizosaccharo... 27 3.8
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ... 26 5.0
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom... 26 5.0
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 26 6.6
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos... 26 6.6
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 8.7
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy... 25 8.7
>SPCC364.06 |nap1||nucleosome assembly protein Nap1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 393
Score = 76.6 bits (180), Expect = 4e-15
Identities = 55/177 (31%), Positives = 82/177 (46%), Gaps = 1/177 (0%)
Frame = +3
Query: 162 LHAEAMASLPPNVRRRIRALRTLQKEFVDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIV 341
L +E ++ LP V+RRI LR LQK + D+E++F E+ R+ +V
Sbjct: 63 LTSEGVSELPEAVQRRISGLRGLQKRYSDLESQFQKELFELEKAYAKKYAPIFKRRSEVV 122
Query: 342 NGTYEPNDDECLNPWRDDTEEEELARAVQNAAITEGEEKKDDKAIEPPMDPNVKGIPDFW 521
G EP ++E ++ E A + T E KK + + KGIP+FW
Sbjct: 123 RGADEPTEEEI--------KKGEAADENEKKEPTSSESKKQEGG------DDTKGIPEFW 168
Query: 522 YNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDP-LKLHSGILLWSPNEYFTNTV 689
+NV LSEM+ DE L L DI++ E P KL ++ N +FTN +
Sbjct: 169 LTAMKNVLSLSEMITPEDEGALSHLVDIRISYMEKPGFKLE---FEFAENPFFTNKI 222
>SPBC2D10.11c |||nucleosome assembly protein Nap2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 379
Score = 56.8 bits (131), Expect = 3e-09
Identities = 58/199 (29%), Positives = 84/199 (42%), Gaps = 8/199 (4%)
Frame = +3
Query: 117 SGVTRNE--MIAAITNRLHAEA------MASLPPNVRRRIRALRTLQKEFVDIEAKFYSE 272
SG+ RN M++ I RL + + SL P V+ RI AL+ LQK+ I+ +F +
Sbjct: 56 SGLLRNNPAMLSMIEGRLSSLVGKSSGYIESLAPAVQNRITALKGLQKDCDAIQYEFRQK 115
Query: 273 VHAXXXXXXXXXXXXXXXRALIVNGTYEPNDDECLNPWRDDTEEEELARAVQNAAITEGE 452
+ RA I+ G EP DDE D EEE QN
Sbjct: 116 MLDLETKYEKKYQPIFSRRAEIIKGVSEPVDDEL------DHEEE----IFQNNL----- 160
Query: 453 EKKDDKAIEPPMDPNVKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPL 632
P+ KGIP+FW NV ++ EM+ DE +L+ L DI+ +
Sbjct: 161 -------------PDPKGIPEFWLTCLHNVFLVGEMITPEDENVLRSLSDIRFTNLSGDV 207
Query: 633 KLHSGILLWSPNEYFTNTV 689
+ + N+YFTN +
Sbjct: 208 HGYKLEFEFDSNDYFTNKI 226
>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 583
Score = 28.3 bits (60), Expect = 1.2
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +2
Query: 146 GHHKSPSCRSDGIPTPECSSANPRLENSSEGVCRH*GQVL 265
GHHK+P CR+ + S N R E + V RH G V+
Sbjct: 485 GHHKNPKCRAKKLVV---ESRNGRREYVQDAVRRH-GDVI 520
>SPAC2C4.03c |smd2|cwf9|Sm snRNP core protein
Smd2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 115
Score = 26.6 bits (56), Expect = 3.8
Identities = 11/47 (23%), Positives = 25/47 (53%)
Frame = +3
Query: 540 VSMLSEMMQEHDEPILKCLQDIKVQMHEDPLKLHSGILLWSPNEYFT 680
+S+L + ++ HD+ ++ C + K+ HS ++L + E +T
Sbjct: 30 LSVLQQAVKNHDQVLINCRNNKKLLARVKAFDRHSNMVLENVKEMWT 76
>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 726
Score = 26.2 bits (55), Expect = 5.0
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3
Query: 426 QNAAITEGEEKKDDKAIEPPMDPNVKGIP 512
+N+ + E EEK D +AIE + +V G P
Sbjct: 554 KNSLVNEAEEKNDLEAIEAAKNFHVNGKP 582
>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1158
Score = 26.2 bits (55), Expect = 5.0
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +3
Query: 564 QEHDEPILKCLQDIKVQMHEDPLKLHSGILLWSP 665
QE E +++CLQD + + +KL S +L P
Sbjct: 396 QEIAELVIRCLQDRSSHVRRNAIKLFSKLLTTHP 429
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 25.8 bits (54), Expect = 6.6
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 105 HLLKSGVTRNEMIAAITNRLHAEAMASLP 191
HLL++ T +E AA +LH + + S P
Sbjct: 1596 HLLRNSATNDETKAAFVYQLHKQGILSEP 1624
>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 758
Score = 25.8 bits (54), Expect = 6.6
Identities = 16/55 (29%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Frame = -2
Query: 500 YIGIH-WRLDSLVILLFLTLSDGSI---LYRPS*LFFFSVITPWVETFIIIRFIC 348
Y G+ + + ++ ILLF ++ G++ L++P + SV T W+ + I + F+C
Sbjct: 659 YTGLDSYNIFAVGILLFTSVFAGALWWCLHQPKRMMDRSVKTFWIMSSISLTFLC 713
>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1038
Score = 25.4 bits (53), Expect = 8.7
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = +3
Query: 402 EEELARAVQNAAITEGEEKKDDKAIEPPMDPNVKGI 509
EEEL+ ++ N + E++KD+ +P P++ +
Sbjct: 475 EEELSDSLSNDFGIDAEKEKDENLSKPEHHPSITSV 510
>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1583
Score = 25.4 bits (53), Expect = 8.7
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +2
Query: 473 YRASNGSQCKGYPRLLVQHIQEC 541
YR SNG + Y L V+ IQ C
Sbjct: 489 YRLSNGKSIQYYSTLFVRLIQSC 511
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,853,826
Number of Sequences: 5004
Number of extensions: 56711
Number of successful extensions: 193
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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