Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2300
(750 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0356 + 2557127-2557193,2557272-2557315,2557433-2557528,255... 71 7e-13
05_06_0234 - 26602660-26602728,26602814-26602988,26603077-266031... 66 2e-11
04_04_0122 - 22918146-22918220,22918455-22918496,22918586-229186... 54 2e-07
06_03_0740 - 24006485-24006629,24006821-24006864,24006954-240071... 51 1e-06
01_06_0465 - 29573972-29574110,29574300-29574343,29574434-295746... 47 1e-05
02_04_0344 - 22171401-22171448,22171725-22171760,22171996-221720... 45 6e-05
07_03_1756 - 29239137-29239325,29239741-29240259,29240693-292408... 29 5.2
07_03_1554 + 27659995-27660093,27661084-27661120,27661204-276612... 29 5.2
04_04_0466 + 25433678-25434007,25434118-25434176,25434345-254344... 29 5.2
12_01_0109 + 853043-853426,853653-853787,853866-854138 28 6.9
05_05_0163 + 22842955-22844371,22845519-22845592,22845913-22845948 28 9.1
02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,162... 28 9.1
>06_01_0356 +
2557127-2557193,2557272-2557315,2557433-2557528,
2559259-2559351,2559450-2559540,2559617-2559678,
2559754-2559938,2560022-2560199,2560293-2560336,
2560440-2560635,2560728-2560745,2560955-2561005
Length = 374
Score = 71.3 bits (167), Expect = 7e-13
Identities = 58/175 (33%), Positives = 80/175 (45%)
Frame = +3
Query: 165 HAEAMASLPPNVRRRIRALRTLQKEFVDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVN 344
H + + +L PNVR+R+ LR +Q + +IE KF+ E A R IVN
Sbjct: 47 HTDVLEALSPNVRKRVEYLREIQGQHDEIELKFFEERAALEAKYQKLYEPLYTKRYNIVN 106
Query: 345 GTYEPNDDECLNPWRDDTEEEELARAVQNAAITEGEEKKDDKAIEPPMDPNVKGIPDFWY 524
G E D +E A +NAA EG+ D + KG+PDFW
Sbjct: 107 GVVEV----------DGGNDEP---ASENAA--EGK------------DADAKGVPDFWL 139
Query: 525 NIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPLKLHSGILLWSPNEYFTNTV 689
+ +LSE +QE DEP LK L+DIK +DP K + N +F N+V
Sbjct: 140 TAMKTNEVLSEEIQERDEPALKYLKDIKWARIDDP-KGFKLDFFFDTNPFFKNSV 193
>05_06_0234 -
26602660-26602728,26602814-26602988,26603077-26603120,
26603204-26603381,26603468-26603652,26603737-26603801,
26603985-26604066,26604342-26604434,26605096-26605191,
26605312-26605355,26605467-26605530
Length = 364
Score = 66.5 bits (155), Expect = 2e-11
Identities = 55/175 (31%), Positives = 77/175 (44%)
Frame = +3
Query: 165 HAEAMASLPPNVRRRIRALRTLQKEFVDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVN 344
H + + SL P VR+R+ LR +Q + D+EAKF+ E A R IVN
Sbjct: 46 HTDVLESLEPKVRKRVEVLREIQSQHDDLEAKFFEERAALEAKYQKMYEPLYSKRYEIVN 105
Query: 345 GTYEPNDDECLNPWRDDTEEEELARAVQNAAITEGEEKKDDKAIEPPMDPNVKGIPDFWY 524
G E D +E A T E+K++ KG+P+FW
Sbjct: 106 GVVEV----------DGVTKEA-------ADETPAEQKEE------------KGVPEFWL 136
Query: 525 NIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPLKLHSGILLWSPNEYFTNTV 689
N +N +LSE +QE DE LK L+DIK +P K + N +F N+V
Sbjct: 137 NAMKNHEILSEEIQERDEEALKYLKDIKWYRISEP-KGFKLEFYFDTNPFFKNSV 190
>04_04_0122 -
22918146-22918220,22918455-22918496,22918586-22918642,
22918784-22918844,22919219-22919280,22919372-22919485,
22919565-22919636,22919824-22919874,22919990-22920112,
22921261-22921383
Length = 259
Score = 53.6 bits (123), Expect = 2e-07
Identities = 27/63 (42%), Positives = 36/63 (57%)
Frame = +3
Query: 498 VKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPLKLHSGILLWSPNEYF 677
+K IPDFW F + ML E++ E D+ I K L+ I V ED +S L +SPN YF
Sbjct: 72 IKQIPDFWLTAFLSHPMLGELLTEDDQKIFKHLESIDVDDSEDIKSGYSITLTFSPNPYF 131
Query: 678 TNT 686
+T
Sbjct: 132 EDT 134
>06_03_0740 -
24006485-24006629,24006821-24006864,24006954-24007122,
24007226-24007413,24007572-24007634,24007992-24008084,
24009837-24009932,24010024-24010067,24010184-24010357,
24010764-24010974
Length = 408
Score = 50.8 bits (116), Expect = 1e-06
Identities = 26/69 (37%), Positives = 37/69 (53%)
Frame = +3
Query: 483 PMDPNVKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPLKLHSGILLWS 662
P+ KG+PDFW N +N +L+E + E DE LK L+DIK +DP ++
Sbjct: 202 PLYSKEKGVPDFWLNAMKNNEILAEEIHESDEEALKYLKDIKWCRIDDPKGFKFEFFFYT 261
Query: 663 PNEYFTNTV 689
N +F N V
Sbjct: 262 -NPFFKNQV 269
Score = 35.5 bits (78), Expect = 0.045
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +3
Query: 165 HAEAMASLPPNVRRRIRALRTLQKEFVDIEAKFYSE 272
H + + SL P+VR+R+ L +Q + ++E KF+ E
Sbjct: 153 HVDVLESLAPSVRKRVDVLMEIQSQHDELEVKFFEE 188
>01_06_0465 -
29573972-29574110,29574300-29574343,29574434-29574602,
29574707-29574894,29575081-29575145,29575257-29575311,
29575502-29575594,29576035-29576130,29576259-29576302,
29576419-29576431
Length = 301
Score = 47.2 bits (107), Expect = 1e-05
Identities = 25/63 (39%), Positives = 34/63 (53%)
Frame = +3
Query: 501 KGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPLKLHSGILLWSPNEYFT 680
KG+PDFW +N +L+E + E DE LK L+DIK +DP K + N +F
Sbjct: 103 KGVPDFWLKAMKNNEILAEEIHESDEEALKYLKDIKWCRIDDP-KGFKFEFFFDTNPFFK 161
Query: 681 NTV 689
N V
Sbjct: 162 NQV 164
Score = 40.7 bits (91), Expect = 0.001
Identities = 40/164 (24%), Positives = 71/164 (43%), Gaps = 12/164 (7%)
Frame = +3
Query: 165 HAEAMASLPPNVRRRIRALRTLQKEFVDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVN 344
H + + SL P VR+R+ L +Q + ++EAKF E A R+ IV+
Sbjct: 29 HVDVLESLAPVVRKRVDVLIEIQSQHDELEAKFLEEKAALEANYQKLYGPLYSKRSEIVS 88
Query: 345 GTYEPNDDECLNPWRDDTEEEELARAVQNAAITEGEEKKDDKAIEPPMD------PNVKG 506
G E + E + L N + E + D++A++ D + KG
Sbjct: 89 GVLEV-EGETEEREEKGVPDFWLKAMKNNEILAEEIHESDEEALKYLKDIKWCRIDDPKG 147
Query: 507 IP-DFWYN---IFRN--VSMLSEMMQEHDEPILKCLQDIKVQMH 620
+F+++ F+N ++ M+ E DEPIL+ +++ H
Sbjct: 148 FKFEFFFDTNPFFKNQVLTKTYHMIDEDDEPILEKAIGTEIEWH 191
>02_04_0344 -
22171401-22171448,22171725-22171760,22171996-22172056,
22173246-22173304,22173384-22173497,22173575-22173646,
22173786-22173836,22173935-22174057,22175154-22175291
Length = 233
Score = 45.2 bits (102), Expect = 6e-05
Identities = 21/60 (35%), Positives = 34/60 (56%)
Frame = +3
Query: 498 VKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPLKLHSGILLWSPNEYF 677
++ IPDFW F + +LSE++ E D+ + K L+ + V +D +S L +S N YF
Sbjct: 77 IQTIPDFWLTAFLSHPLLSELLTEEDQKMFKYLESVDVDDSKDVKSGYSITLTFSENPYF 136
>07_03_1756 -
29239137-29239325,29239741-29240259,29240693-29240800,
29240856-29241155,29241730-29241831,29243042-29243209,
29243878-29243991,29244184-29244288,29244372-29244502,
29244794-29244918,29245001-29245172,29245277-29245316,
29245636-29245722,29245803-29245868,29246412-29246510,
29246714-29246836,29247066-29247107,29247195-29247260,
29247362-29247553,29247672-29247737,29248839-29249141
Length = 1038
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +3
Query: 330 ALIVNGTYEPNDDECLNPWRDDTEEEELARAVQNAAITEGE 452
A IV + EPN + N +D+T E+ A +NAA+T +
Sbjct: 685 AAIVTASEEPNGGDSANKLKDETMEDP---ATENAAMTNAD 722
>07_03_1554 +
27659995-27660093,27661084-27661120,27661204-27661280,
27662272-27662342,27662512-27662590,27662726-27662828,
27662963-27663082,27663180-27663257,27663416-27663471,
27663588-27663657,27664179-27664266,27664503-27664800,
27664943-27665158,27665521-27665841,27666054-27666103,
27666493-27666553,27666633-27666716,27666926-27667039,
27667134-27667300,27667559-27667628,27668328-27668507,
27668619-27668807
Length = 875
Score = 28.7 bits (61), Expect = 5.2
Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Frame = +3
Query: 441 TEGEEKKDDKAIEPPMDPNVKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMH 620
++GE +DKA+E +D N N+ NV E D P + QD + M
Sbjct: 470 SDGEPSTEDKALETKVDVNDAQHSHLAENVSVNV---QRSPNEKDPPNMVSSQDSPLSMG 526
Query: 621 EDPLKLHSGILLWSPN-EY 674
+ L +GI L P EY
Sbjct: 527 DILSSLDAGISLPGPGPEY 545
>04_04_0466 +
25433678-25434007,25434118-25434176,25434345-25434426,
25435024-25435122,25435750-25435831,25436759-25436823,
25437241-25438308,25438369-25438446,25438550-25438596,
25438734-25438779,25438871-25438950,25439050-25439166,
25439842-25439923,25440156-25440281,25440415-25440489,
25440743-25440868,25441542-25441646
Length = 888
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = -2
Query: 272 FTVKLGLNVDKLLLKSSQGADSPTNIRG*GCHRFCMKAICDGRYHFIT 129
FT + L+ + LL ++ A+ T + G C++++CDG H +T
Sbjct: 177 FTFNISLSRENLLQVAAWDANLVTPHKRMGNAGLCLESLCDGSNHNVT 224
>12_01_0109 + 853043-853426,853653-853787,853866-854138
Length = 263
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -1
Query: 186 GMPSLLHEGDL*WPLSFHYGSRHFSTGVALVHHFXXXXXXLQTP 55
G+P L GD+ + L+F G+ H T VAL F Q+P
Sbjct: 129 GVPDLSEHGDV-YDLTFGLGADHPPTAVALRKEFQRIILYQQSP 171
>05_05_0163 + 22842955-22844371,22845519-22845592,22845913-22845948
Length = 508
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/51 (27%), Positives = 28/51 (54%)
Frame = -2
Query: 395 VITPWVETFIIIRFICAIHNKSSLFIKRLVKFFIFAFECMYFTVKLGLNVD 243
V+ PW+++F I + +H+K +L K +K A + + +K G+ +D
Sbjct: 459 VLPPWLDSFPIPNAVLCLHSKINLSGKNNMKNETLA-DILVINIKTGILMD 508
>02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,
1625603-1625887,1626016-1626030,1626339-1626419,
1626909-1627322,1627423-1627719,1627801-1629864
Length = 3057
Score = 27.9 bits (59), Expect = 9.1
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Frame = +3
Query: 339 VNGTYEPNDDECLNPWRDDTEEEELARAVQNAAITEGEEKKDDKAIEPPMDPNVKGIPDF 518
VN + +DE + ++D E E+ Q + E+K DDK ++ +D V+ I F
Sbjct: 1951 VNLDQQQKEDEEIEKQKEDEEIEK-----QKEELQTDEQKHDDKRVDFIIDTQVESIDAF 2005
Query: 519 WYNIFRNV--SMLSEMMQEHD 575
+V ML++ + +H+
Sbjct: 2006 QAEQTDSVVTEMLNDEVTQHE 2026
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,632,638
Number of Sequences: 37544
Number of extensions: 374830
Number of successful extensions: 1021
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1018
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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