Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2300
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40800-9|AAA81494.1|  316|Caenorhabditis elegans Hypothetical pr...    79   4e-15
Z54236-2|CAE46661.1|  313|Caenorhabditis elegans Hypothetical pr...    50   1e-06
Z54236-1|CAA90979.2|  312|Caenorhabditis elegans Hypothetical pr...    50   1e-06
AF321546-1|AAG42102.1|  312|Caenorhabditis elegans suppressor of...    50   1e-06
L13200-4|AAA28191.2|  645|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z81123-2|CAB03365.1|  734|Caenorhabditis elegans Hypothetical pr...    29   4.7  
Z75545-5|CAA99883.3|  836|Caenorhabditis elegans Hypothetical pr...    29   4.7  
Z46829-1|CAA86862.1|  375|Caenorhabditis elegans Hypothetical pr...    29   4.7  
AL023835-4|CAD56254.1|  564|Caenorhabditis elegans Hypothetical ...    28   6.2  
AL023835-3|CAD56253.1|  566|Caenorhabditis elegans Hypothetical ...    28   6.2  
AL023835-2|CAA19487.2|  592|Caenorhabditis elegans Hypothetical ...    28   6.2  
AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical ...    28   8.1  

>U40800-9|AAA81494.1|  316|Caenorhabditis elegans Hypothetical
           protein D2096.8 protein.
          Length = 316

 Score = 78.6 bits (185), Expect = 4e-15
 Identities = 53/173 (30%), Positives = 78/173 (45%)
 Frame = +3

Query: 171 EAMASLPPNVRRRIRALRTLQKEFVDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVNGT 350
           + + +LP NV++R+ AL+ LQ + + IE+ FY  VH                R  IV G 
Sbjct: 17  DMIQALPLNVKQRVCALKNLQMKTIQIESDFYKRVHELEIEFEGKFKSTFDQRKAIVAGE 76

Query: 351 YEPNDDECLNPWRDDTEEEELARAVQNAAITEGEEKKDDKAIEPPMDPNVKGIPDFWYNI 530
            EP  ++   P  +  E ++LA                 KA E   DP+ KGI DFW   
Sbjct: 77  VEPTKEQIDTPILEGLEGDQLAELY--------------KAAEA--DPSAKGIKDFWLTA 120

Query: 531 FRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPLKLHSGILLWSPNEYFTNTV 689
            R   +++E ++EHD PIL  L D+     +DP         ++ N YF N V
Sbjct: 121 LRTHDLVAEAIEEHDVPILSYLTDVTTAASKDPAGFKIE-FHFATNPYFKNQV 172


>Z54236-2|CAE46661.1|  313|Caenorhabditis elegans Hypothetical
           protein C27B7.1b protein.
          Length = 313

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 25/61 (40%), Positives = 34/61 (55%)
 Frame = +3

Query: 507 IPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPLKLHSGILLWSPNEYFTNT 686
           I +FW   F N  +LS  + E  E +L  L+D++VQ  ED       I+ + PNEYFTN 
Sbjct: 77  IDNFWQTAFLNHHLLSTAIPEEQEDLLAALRDLEVQEFEDLRSGFKIIMTFDPNEYFTNE 136

Query: 687 V 689
           V
Sbjct: 137 V 137


>Z54236-1|CAA90979.2|  312|Caenorhabditis elegans Hypothetical
           protein C27B7.1a protein.
          Length = 312

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 25/61 (40%), Positives = 34/61 (55%)
 Frame = +3

Query: 507 IPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPLKLHSGILLWSPNEYFTNT 686
           I +FW   F N  +LS  + E  E +L  L+D++VQ  ED       I+ + PNEYFTN 
Sbjct: 77  IDNFWQTAFLNHHLLSTAIPEEQEDLLAALRDLEVQEFEDLRSGFKIIMTFDPNEYFTNE 136

Query: 687 V 689
           V
Sbjct: 137 V 137


>AF321546-1|AAG42102.1|  312|Caenorhabditis elegans suppressor of
           presenilin 2 protein.
          Length = 312

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 25/61 (40%), Positives = 34/61 (55%)
 Frame = +3

Query: 507 IPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPLKLHSGILLWSPNEYFTNT 686
           I +FW   F N  +LS  + E  E +L  L+D++VQ  ED       I+ + PNEYFTN 
Sbjct: 77  IDNFWQTAFLNHHLLSTAIPEEQEDLLAALRDLEVQEFEDLRSGFKIIMTFDPNEYFTNE 136

Query: 687 V 689
           V
Sbjct: 137 V 137


>L13200-4|AAA28191.2|  645|Caenorhabditis elegans Hypothetical
           protein ZK1236.1 protein.
          Length = 645

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 284 ECMYFTVKLGLNVDKLLLKSSQGADSPTNI 195
           EC++ + K GLNVDK+L        +PT I
Sbjct: 188 ECLHISAKSGLNVDKVLEAIIDRVPAPTAI 217


>Z81123-2|CAB03365.1|  734|Caenorhabditis elegans Hypothetical
           protein T14D7.2 protein.
          Length = 734

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
 Frame = -2

Query: 407 FFFSVITPWVETFIIIRFICAIHNKSSLFIKRLVKFFI---FAFECMYFTVKLGLNVDKL 237
           + F +I P V T++++ F    + +  LFI   V+  I   FA  C   +    LN+++L
Sbjct: 648 YLFHMI-PVVLTYMLVPFPIYFNTQIPLFIHCFVQLLITYFFAIICTMVSELPALNIERL 706

Query: 236 LLKS 225
           LL S
Sbjct: 707 LLAS 710


>Z75545-5|CAA99883.3|  836|Caenorhabditis elegans Hypothetical
           protein K10D3.1 protein.
          Length = 836

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 7/63 (11%)
 Frame = +3

Query: 501 KGIP---DFWYNIFRNVSMLSEMMQEHDEPIL----KCLQDIKVQMHEDPLKLHSGILLW 659
           KG+P     W +  R +    + +Q  DEP      K   DIK +  E+PL   SG L W
Sbjct: 289 KGVPYTTSIWIDTLRLLIRSMKSIQIWDEPRCGSSWKSGSDIKKRFFENPLAGISGDLHW 348

Query: 660 SPN 668
           +P+
Sbjct: 349 APS 351


>Z46829-1|CAA86862.1|  375|Caenorhabditis elegans Hypothetical
           protein T14B1.1 protein.
          Length = 375

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +3

Query: 378 NPWRDDTEEEELARAVQNAAITEGEEKKDDKAIEPPMD 491
           +P RD+  EE LA+ ++  A   GE+++ +   EP  D
Sbjct: 6   DPGRDEEVEEPLAKKIRVVAQEAGEDEESEMEKEPNAD 43


>AL023835-4|CAD56254.1|  564|Caenorhabditis elegans Hypothetical
           protein Y37A1B.2d protein.
          Length = 564

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 25/118 (21%), Positives = 52/118 (44%), Gaps = 3/118 (2%)
 Frame = +3

Query: 336 IVNGTYEPNDDECLNPWRDDTEEEELARAVQNAAITEGEEKKDDKAIEPPMDPNVKGIPD 515
           +   +Y   +D+  + W D+ +E+E  R   N   + G   + D +       +  G PD
Sbjct: 117 VTRSSYPSQNDDFDDEWTDEDDEQEPTR--PNVQSSIGSNSRRDLS----RSHSEHGGPD 170

Query: 516 FWYN-IFRNVSMLSEMMQEHDEPILKCLQDIKVQMHE-DPLKLHSGILLWSP-NEYFT 680
              N + +N++  S  ++   E  +        Q+ E   + +++GI+ W P  +Y+T
Sbjct: 171 RGSNKVNKNINRFSNFVKSGVEAYVIGESKTTSQISERHEVVMNNGIIQWKPIQQYYT 228


>AL023835-3|CAD56253.1|  566|Caenorhabditis elegans Hypothetical
           protein Y37A1B.2c protein.
          Length = 566

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 25/118 (21%), Positives = 52/118 (44%), Gaps = 3/118 (2%)
 Frame = +3

Query: 336 IVNGTYEPNDDECLNPWRDDTEEEELARAVQNAAITEGEEKKDDKAIEPPMDPNVKGIPD 515
           +   +Y   +D+  + W D+ +E+E  R   N   + G   + D +       +  G PD
Sbjct: 117 VTRSSYPSQNDDFDDEWTDEDDEQEPTR--PNVQSSIGSNSRRDLS----RSHSEHGGPD 170

Query: 516 FWYN-IFRNVSMLSEMMQEHDEPILKCLQDIKVQMHE-DPLKLHSGILLWSP-NEYFT 680
              N + +N++  S  ++   E  +        Q+ E   + +++GI+ W P  +Y+T
Sbjct: 171 RGSNKVNKNINRFSNFVKSGVEAYVIGESKTTSQISERHEVVMNNGIIQWKPIQQYYT 228


>AL023835-2|CAA19487.2|  592|Caenorhabditis elegans Hypothetical
           protein Y37A1B.2b protein.
          Length = 592

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 25/118 (21%), Positives = 52/118 (44%), Gaps = 3/118 (2%)
 Frame = +3

Query: 336 IVNGTYEPNDDECLNPWRDDTEEEELARAVQNAAITEGEEKKDDKAIEPPMDPNVKGIPD 515
           +   +Y   +D+  + W D+ +E+E  R   N   + G   + D +       +  G PD
Sbjct: 143 VTRSSYPSQNDDFDDEWTDEDDEQEPTR--PNVQSSIGSNSRRDLS----RSHSEHGGPD 196

Query: 516 FWYN-IFRNVSMLSEMMQEHDEPILKCLQDIKVQMHE-DPLKLHSGILLWSP-NEYFT 680
              N + +N++  S  ++   E  +        Q+ E   + +++GI+ W P  +Y+T
Sbjct: 197 RGSNKVNKNINRFSNFVKSGVEAYVIGESKTTSQISERHEVVMNNGIIQWKPIQQYYT 254


>AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical
            protein W09B6.1a protein.
          Length = 2054

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
 Frame = +3

Query: 399  EEEELARAVQNAAI---TEGEEKKDDKAIEPPMDPNVKGIPDFWYNIFRNVSMLSEMMQE 569
            +EE+     QNA +   T  E++     +   +  N + +P     IF  V +  + +  
Sbjct: 1101 QEEQRVCYAQNAVVDMKTILEKEFRVNRVNTVLCLNDRPLPQL--TIFEQVRLEKDRLPA 1158

Query: 570  HDEPILKCLQDIKVQMHEDP 629
            +  P+L  L  ++V  H+DP
Sbjct: 1159 NSYPVLSKLSTVRVSQHDDP 1178


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,990,782
Number of Sequences: 27780
Number of extensions: 330870
Number of successful extensions: 1046
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1045
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)