Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2299
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2...    27   1.8  
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa...    27   2.3  
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    26   5.4  

>SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 479

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = -3

Query: 174 TPVESSRTIVPHTRTRYPQMIQKKLTHQRSNISARMNTPRHACGSFPRRVLQN 16
           TP  + RT+ PH R    +  +  L  +RSN+ +   TPR       R + +N
Sbjct: 36  TPRSAQRTVTPHKRRALAR--RNSLARRRSNVFS-ATTPRDILRMLSRALAKN 85


>SPCC550.03c |||RNA helicase involved in mRNA
           catabolism|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1213

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = +2

Query: 134 RVCGTIVRLDSTGVR 178
           RVC TI+R+DS G+R
Sbjct: 908 RVCNTILRIDSGGIR 922


>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1238

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 15/52 (28%), Positives = 21/52 (40%)
 Frame = -2

Query: 175 NTSRVQPNYRTAYPNSISSDDSKKTNASEIKHLGSHEHAAPRLRVLPSSSLT 20
           NT    P    +  +SISSD    +N   +       HAAP  + L   S +
Sbjct: 698 NTDCSLPKPSNSKLSSISSDGDASSNRMAVPDKSPFVHAAPNSKALTKDSFS 749


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,394,224
Number of Sequences: 5004
Number of extensions: 44488
Number of successful extensions: 97
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)