Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2299
         (650 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69385-3|CAA93426.2| 1477|Caenorhabditis elegans Hypothetical pr...    28   6.6  
AC199240-1|ABO33278.1|  427|Caenorhabditis elegans Hypothetical ...    27   8.7  

>Z69385-3|CAA93426.2| 1477|Caenorhabditis elegans Hypothetical
           protein ZK593.4 protein.
          Length = 1477

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = -2

Query: 163 VQPNYRTAYPNSISSDDSKKTNASEIKHLGSHEHAAPRLRV-LPSSSLTK 17
           ++P  R     ++ +DD       E+KH   H H   R  + +P+   T+
Sbjct: 210 IEPFNRNLKEKAMKNDDESDDEMEELKHKYQHHHGTMRTEIEVPNDKTTE 259


>AC199240-1|ABO33278.1|  427|Caenorhabditis elegans Hypothetical
           protein 2L52.1 protein.
          Length = 427

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = -3

Query: 159 SRTIVPHTRTRYPQMIQKKLTHQRSN 82
           S ++VP  R  +P+ ++K+L+ QR+N
Sbjct: 229 SASMVPSKRRNWPKRVKKRLSTQRNN 254


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,214,948
Number of Sequences: 27780
Number of extensions: 245068
Number of successful extensions: 591
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 590
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)