Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2298
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z67995-2|CAA91944.2|  458|Caenorhabditis elegans Hypothetical pr...    29   3.5  

>Z67995-2|CAA91944.2|  458|Caenorhabditis elegans Hypothetical
           protein M153.2 protein.
          Length = 458

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 1/93 (1%)
 Frame = -1

Query: 528 FNVLSISTSTFTQLMRASPFPXXCKMRSFPSASXSXVKLMLLMK-ANLKFPWSPSNLXXN 352
           F VLS+ ++    L+RA  +P     +++     S  KLML  K   L F ++ + +   
Sbjct: 181 FTVLSLISTVIFALLRAPSYPAVVDRKNYGKLVASTFKLMLTKKMILLAFVFAYTGI-EQ 239

Query: 351 SXXXLPFNPCXNALVNVSFNPLPSMLMSSXCTG 253
           S     +  C +    +  N    + +++ CTG
Sbjct: 240 SFWTAIYPTCISFTKQLGNNTNALLALNAICTG 272


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,471,219
Number of Sequences: 27780
Number of extensions: 188079
Number of successful extensions: 338
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 338
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)