Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2297
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPYUG7.02c |sin1||stress activated MAP kinase interacting prot...    28   1.6  
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    26   5.0  
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    25   8.7  
SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyce...    25   8.7  
SPCC1235.03 |||SMR and CUE domain protein|Schizosaccharomyces po...    25   8.7  

>SPAPYUG7.02c |sin1||stress activated MAP kinase interacting protein
           Sin1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +1

Query: 472 STPHPVTEAQANAPLRSRHDQFLASTTERTQQRQSSSGRNPS 597
           +TP  + E QA  P +S+H   +     +T  R +SS  + S
Sbjct: 383 ATPAQIKENQAAYPFKSKHPTSIPEANNKTHIRHTSSTSSQS 424


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1337

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +1

Query: 472 STPHPVTEAQANAPLRSRHDQFLASTTERTQQRQSSSGRNPSVSFES 612
           S+ +PVT   A+ P  S +  F      R   +Q S  +NPS S  S
Sbjct: 92  SSANPVTFEIADEPSPSFNHSFFEKDNARDIPQQPSHSQNPSSSSSS 138


>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 18/49 (36%), Positives = 21/49 (42%)
 Frame = +1

Query: 457 AVSRSSTPHPVTEAQANAPLRSRHDQFLASTTERTQQRQSSSGRNPSVS 603
           A   SST +P T   + +PL S       ST   T    SSS  NP  S
Sbjct: 386 AFPNSSTSNPSTAPASASPLAS---TLKPSTANDTNGSSSSSSSNPRTS 431


>SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 568

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 130 TYGSV*IVLALTLATGNRAVNEIRLTFLLTVLWP 231
           TYG V +  +L L TG   +  +  T+ L   WP
Sbjct: 466 TYGDVGVASSLALVTGLGNLGSVVTTYALYSGWP 499


>SPCC1235.03 |||SMR and CUE domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 399

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 431 YHKSSLSYRSCAGSTLRRSGSPDS 360
           YH+ +L YRS A  +L  SG+  S
Sbjct: 285 YHEKALKYRSLAMRSLAHSGTSHS 308


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,930,342
Number of Sequences: 5004
Number of extensions: 56816
Number of successful extensions: 134
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)