Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2297
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038605-2|AAB92020.1|  698|Caenorhabditis elegans Hypothetical ...    30   2.0  
AC025721-6|AAK29909.1|  191|Caenorhabditis elegans Hypothetical ...    30   2.0  
AC024796-9|AAK29893.2|  454|Caenorhabditis elegans Hypothetical ...    28   6.2  
Z95310-2|CAB08563.1|  394|Caenorhabditis elegans Hypothetical pr...    28   8.1  
Z83104-6|CAB05479.1|  394|Caenorhabditis elegans Hypothetical pr...    28   8.1  

>AF038605-2|AAB92020.1|  698|Caenorhabditis elegans Hypothetical
           protein C02B10.5 protein.
          Length = 698

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 18/41 (43%), Positives = 21/41 (51%)
 Frame = -2

Query: 413 SYRSCAGSTLRRSGSPDSTHCGTASTIGVHCNFLSHFTVKP 291
           SY S  GST   S  P S   GT+ST G H   L+ F+  P
Sbjct: 149 SYVSEKGSTTPMSSQPSSHQSGTSSTNGAH-GGLNGFSCSP 188


>AC025721-6|AAK29909.1|  191|Caenorhabditis elegans Hypothetical
           protein Y48G8AL.7 protein.
          Length = 191

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +2

Query: 398 RMIDSSVTTYGKRCLRTVEQQYQDPPHLIQ*PKHKPML 511
           R +   +T YG+R  +T+E+    P HL Q P   P +
Sbjct: 128 RNLQRIITKYGRRTKKTIEELLFSPIHLEQQPDEAPRI 165


>AC024796-9|AAK29893.2|  454|Caenorhabditis elegans Hypothetical
           protein Y48G1C.1 protein.
          Length = 454

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +2

Query: 491 PKHKPMLPCGRDMISFSLVPLNARSKGNLPAAEIQ-VSASSLHHXLTIGR*LP 646
           P+ K MLP     I    VP+    K + P  EI+ VS+ S  H ++  R +P
Sbjct: 11  PQSKQMLPPEPPRIILREVPVQNNQKEHPPVQEIKTVSSKSKEHRVSSSRKIP 63


>Z95310-2|CAB08563.1|  394|Caenorhabditis elegans Hypothetical
           protein F09B12.5 protein.
          Length = 394

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = +1

Query: 460 VSRSSTPHPVTEAQANAPLRSRHDQFLASTTERTQQRQSSSGR 588
           ++R+    P T +Q    ++  +D F  STT++ +  +SS+ R
Sbjct: 313 IARTFASQPHTTSQPKIVVKLLNDSFSNSTTDKAKSTESSASR 355


>Z83104-6|CAB05479.1|  394|Caenorhabditis elegans Hypothetical
           protein F09B12.5 protein.
          Length = 394

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = +1

Query: 460 VSRSSTPHPVTEAQANAPLRSRHDQFLASTTERTQQRQSSSGR 588
           ++R+    P T +Q    ++  +D F  STT++ +  +SS+ R
Sbjct: 313 IARTFASQPHTTSQPKIVVKLLNDSFSNSTTDKAKSTESSASR 355


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,711,930
Number of Sequences: 27780
Number of extensions: 338736
Number of successful extensions: 868
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)