Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2296
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity ...    44   2e-05
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    27   2.6  
SPAPB17E12.14c |||6-phosphofructo-2-kinase |Schizosaccharomyces ...    25   7.9  
SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces...    25   7.9  

>SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 408

 Score = 44.0 bits (99), Expect = 2e-05
 Identities = 17/37 (45%), Positives = 25/37 (67%)
 Frame = +1

Query: 1   LPYLQVPLHAVIKLTPVAYGCRDEHIRLSVDAVDTHR 111
           LP++ VPLH +IKLTP+ Y   +E + + + AV T R
Sbjct: 369 LPFINVPLHTIIKLTPMTYETIEERVTVPISAVSTQR 405


>SPBC12C2.02c |ste20|ste16|sterility protein
           Ste20|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1309

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -3

Query: 101 STASTLSRMCSSRQPYATGVSLMTACSGTC 12
           S ++T+SR  S ++ Y+T  S    CS +C
Sbjct: 121 SASATVSRKSSLQEKYSTRFSYKAGCSDSC 150


>SPAPB17E12.14c |||6-phosphofructo-2-kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 1   LPYLQVPLHAVIKLTPVAYG 60
           + YL VPLH V  + P  YG
Sbjct: 433 IAYLNVPLHTVYCIEPQPYG 452


>SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 404

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = -1

Query: 637 DHITLLPVTSNKHMQVTSLFEHSQTATRSSPS 542
           DH+ +LP++ +K M ++S  +  Q A+ S+ S
Sbjct: 48  DHVNVLPISQDKEMDISSPVK-KQKASYSNKS 78


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,234,476
Number of Sequences: 5004
Number of extensions: 41478
Number of successful extensions: 115
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)