Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2296
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0050 - 352017-354272                                             30   2.0  
03_06_0096 - 31627332-31627570,31628467-31628743,31628963-316291...    28   8.2  

>02_01_0050 - 352017-354272
          Length = 751

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +2

Query: 554 ACGCLRVFEE*CYLHMFVRRNW*QSNVVADS 646
           ACG L   EE   +H ++ R W + NV   S
Sbjct: 287 ACGALAALEEGKQIHAYITRTWYEDNVFVGS 317


>03_06_0096 -
           31627332-31627570,31628467-31628743,31628963-31629118,
           31629205-31629381,31629543-31629745,31630680-31630995
          Length = 455

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 17/65 (26%), Positives = 28/65 (43%)
 Frame = -1

Query: 547 PSLPVTTIGIYK*KNLNFIIRSYKTRRPRTFSRRFHNFTTFSILNLRNEEKSTDNIYLSL 368
           P +P   + + K    + ++        RT   RF++FT +  LN R E      +  +L
Sbjct: 122 PEVPEQNLSVQKVVYKSSLLHLGDDDSSRTEISRFNSFTGYQTLNEREESFKMKEL-TTL 180

Query: 367 SCSFY 353
            C FY
Sbjct: 181 HCGFY 185


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,292,442
Number of Sequences: 37544
Number of extensions: 225058
Number of successful extensions: 546
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)