Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2296
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006708-18|AAF60424.2|  450|Caenorhabditis elegans Hypothetical...    52   3e-07
AC006708-17|AAK68884.2|  435|Caenorhabditis elegans Hypothetical...    38   0.007
U41558-2|AAK39245.2|  457|Caenorhabditis elegans Hypothetical pr...    38   0.009
Z49907-6|CAA90089.1|  274|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z66511-4|CAA91316.1|  813|Caenorhabditis elegans Hypothetical pr...    28   5.6  
Z49966-5|CAA90245.1|  445|Caenorhabditis elegans Hypothetical pr...    28   7.4  

>AC006708-18|AAF60424.2|  450|Caenorhabditis elegans Hypothetical
           protein Y110A7A.6a protein.
          Length = 450

 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 22/37 (59%), Positives = 28/37 (75%)
 Frame = +1

Query: 1   LPYLQVPLHAVIKLTPVAYGCRDEHIRLSVDAVDTHR 111
           LPYL+VPLH VIKLTP AY C  E  +  ++AV+T+R
Sbjct: 410 LPYLKVPLHTVIKLTPKAYSCEIELFKFDIEAVNTYR 446


>AC006708-17|AAK68884.2|  435|Caenorhabditis elegans Hypothetical
           protein Y110A7A.6b protein.
          Length = 435

 Score = 37.9 bits (84), Expect = 0.007
 Identities = 16/19 (84%), Positives = 17/19 (89%)
 Frame = +1

Query: 1   LPYLQVPLHAVIKLTPVAY 57
           LPYL+VPLH VIKLTP AY
Sbjct: 416 LPYLKVPLHTVIKLTPKAY 434


>U41558-2|AAK39245.2|  457|Caenorhabditis elegans Hypothetical
           protein K02B2.1 protein.
          Length = 457

 Score = 37.5 bits (83), Expect = 0.009
 Identities = 13/21 (61%), Positives = 18/21 (85%)
 Frame = +1

Query: 1   LPYLQVPLHAVIKLTPVAYGC 63
           LPY+ +PLH+++KLTP AY C
Sbjct: 408 LPYIDIPLHSLVKLTPRAYHC 428


>Z49907-6|CAA90089.1|  274|Caenorhabditis elegans Hypothetical
           protein B0491.7 protein.
          Length = 274

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 675 LLSPCVRPHRESATTLLCYQLRLTNICK 592
           ++  C R H E+ T++LCY L  TN+ K
Sbjct: 23  IVKNCARVHLEAYTSILCYGLDKTNLEK 50


>Z66511-4|CAA91316.1|  813|Caenorhabditis elegans Hypothetical
           protein F07A11.3 protein.
          Length = 813

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -2

Query: 552 HRHRCQ*LQ*VFINKKTLTLLSAVIKRDDREHFHDVFTT 436
           HR   Q ++ +F+ +  + L  A ++ DD  +F+D FT+
Sbjct: 748 HRKEIQEIRNLFLPQFFILLAQAAVRLDDTTNFNDFFTS 786


>Z49966-5|CAA90245.1|  445|Caenorhabditis elegans Hypothetical
           protein F35C11.5 protein.
          Length = 445

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 18/60 (30%), Positives = 32/60 (53%)
 Frame = -1

Query: 397 KSTDNIYLSLSCSFYL*IMLLTTNIPRILCVSLFLIFFLESVSFYKAAIT*YIL*KLNTR 218
           K+T++ + S+  S Y     +++    + C S  L+ F+ES  FYK  I  + L  L+T+
Sbjct: 26  KTTEDRFHSIFLSAYKPNKFISSIF--VCCNSFLLLNFVESFLFYKKEIRLFFLNNLSTK 83


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,257,956
Number of Sequences: 27780
Number of extensions: 228772
Number of successful extensions: 551
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)