Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2292
         (800 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|...    28   1.8  
SPAC1B3.08 |||COP9 signalosome complex subunit 12 |Schizosacchar...    26   5.4  
SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter ...    26   5.4  
SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit Nse6|Schizosa...    25   9.5  

>SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -1

Query: 602 YYWYFEAYEYNRHHKYFVKTI*HLYL-VLHKNMNGLS 495
           YY YF+  E  RH K F+K   HL L V  KN+ G++
Sbjct: 87  YYVYFDREEARRHPK-FLKNQEHLELMVALKNLPGMA 122


>SPAC1B3.08 |||COP9 signalosome complex subunit 12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 423

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +2

Query: 512 SYAILGISVKLFLRNICDVDCIHMLQN 592
           +Y I+G+  KL+LR    +DC+H+  N
Sbjct: 188 AYYIMGLLFKLYLR----LDCVHLTNN 210


>SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter
           Str2 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 597

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +3

Query: 597 IVFRYVMSVDIYSNIL--FFSFNYSISLCKKYLPTNI 701
           ++F Y MS  I+SN L  F   +Y +S+    L  N+
Sbjct: 358 LIFTYFMSYYIFSNFLTSFLQVSYGLSIDMSSLTLNV 394


>SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit
           Nse6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 522

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +2

Query: 476 RLHCYGGKVRSYSYAILGISVKLFLRNICDV-DCIHML 586
           RL C   K+R     I G +  L L   C+V DCIH L
Sbjct: 418 RLECLLEKLRKIDLTISGSTDHLLLSR-CEVKDCIHRL 454


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,891,679
Number of Sequences: 5004
Number of extensions: 55285
Number of successful extensions: 107
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)