Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2292
         (800 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79605-5|CAB01907.2|  316|Caenorhabditis elegans Hypothetical pr...    35   0.078
Z75554-7|CAA99960.1|  297|Caenorhabditis elegans Hypothetical pr...    30   2.2  
U97008-7|AAB52313.1|  385|Caenorhabditis elegans Temporarily ass...    29   2.9  
AL021491-2|CAA16375.1|  319|Caenorhabditis elegans Hypothetical ...    29   2.9  
AC024817-13|AAL00869.1|  187|Caenorhabditis elegans Hypothetical...    29   5.1  
L12018-10|AAA65466.2|  683|Caenorhabditis elegans Dumpy : shorte...    28   8.9  

>Z79605-5|CAB01907.2|  316|Caenorhabditis elegans Hypothetical
           protein ZK678.6 protein.
          Length = 316

 Score = 34.7 bits (76), Expect = 0.078
 Identities = 12/47 (25%), Positives = 26/47 (55%)
 Frame = +3

Query: 549 YEIFVMSIVFICFKIPIVFRYVMSVDIYSNILFFSFNYSISLCKKYL 689
           YE++++  VFIC   P+  +   +V    ++++F  N S+ L   ++
Sbjct: 166 YEVYIIDDVFICIHFPLALKAAYNVVAVFSVIYFLLNLSMGLITAFM 212


>Z75554-7|CAA99960.1|  297|Caenorhabditis elegans Hypothetical
           protein ZC455.9 protein.
          Length = 297

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +3

Query: 549 YEIF-VMSIVFICFKIPIVFRYVMSVDIYSNILFFSFNYSISLCKKYLPTNILS*KY 716
           Y ++ +   V IC+ I +   YV ++DI     FF F+Y I      L +NILS ++
Sbjct: 45  YHLYQIRFFVDICYSIAVSIYYV-ALDISYLSPFFLFHYKILFVVTLLSSNILSTRF 100


>U97008-7|AAB52313.1|  385|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 293 protein.
          Length = 385

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
 Frame = +3

Query: 561 VMSIVFICFKIPIVFRYVMSVDIYSNILFFSFN--YSISLCKKYLPTNILS*KYLKKIFK 734
           V+  VF+CF  P+V   + + +IY   +F   N  ++   CK+++   +L  K LK  F 
Sbjct: 60  VLCAVFLCFYCPMVL--LFASNIYEKFIFLRGNARFTPETCKRFV---LLYRKILKTHFF 114

Query: 735 NPK 743
           N K
Sbjct: 115 NDK 117


>AL021491-2|CAA16375.1|  319|Caenorhabditis elegans Hypothetical
           protein Y44A6B.3 protein.
          Length = 319

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 10/27 (37%), Positives = 20/27 (74%)
 Frame = +3

Query: 597 IVFRYVMSVDIYSNILFFSFNYSISLC 677
           +V + + S++ YS+  +F FNY++S+C
Sbjct: 114 LVNKTIYSLEFYSDDPYFYFNYTVSIC 140


>AC024817-13|AAL00869.1|  187|Caenorhabditis elegans Hypothetical
           protein Y54G2A.32 protein.
          Length = 187

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
 Frame = +3

Query: 639 ILFFSFNYSISLCKKYLPTNILS*KYLKKI-FKNPKXRFWYLDVPIXN 779
           + F  + YS+     YL    +S KYL K    N K  FW  D    N
Sbjct: 91  LTFIDYRYSLKKYINYLYNQAISTKYLTKAEANNMKTMFWAADTKANN 138


>L12018-10|AAA65466.2|  683|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 19 protein.
          Length = 683

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 4/44 (9%)
 Frame = +1

Query: 568 RLYSYASKYQ*--YS--DMLCQLISIPIYFFFPLTIVYHFVKNT 687
           RLY+ ++++    YS  + LC  + IP+     +T V++FVKNT
Sbjct: 393 RLYTCSAEFDFIQYSTIEKLCGTLLIPLALISLVTFVFNFVKNT 436


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,604,842
Number of Sequences: 27780
Number of extensions: 297655
Number of successful extensions: 720
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)