Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2291
         (500 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0917 + 32978306-32978434,32978570-32978645,32979324-329793...    29   1.6  
01_06_0916 + 32950575-32950656,32952061-32952272,32952408-329524...    29   1.6  
12_02_0998 + 25126114-25126596,25129213-25129339,25129349-251294...    28   3.7  
12_01_0049 + 417325-419068,419667-420307                               28   4.8  
11_01_0047 + 358370-360107,360713-361353                               27   8.5  

>01_06_0917 +
           32978306-32978434,32978570-32978645,32979324-32979391,
           32979868-32979959,32980121-32980194,32980372-32980415,
           32980752-32980803,32981200-32981319,32981391-32981503,
           32981674-32981761,32982144-32982229,32982832-32982918,
           32983149-32983252,32983607-32983709,32983861-32983956,
           32984067-32984256,32984352-32984413,32984560-32984664,
           32985163-32985364,32985473-32985681,32986413-32986537,
           32986644-32986695,32986772-32986858,32987125-32987247,
           32987375-32987629
          Length = 913

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
 Frame = -2

Query: 424 EFVNEKAVTVYSVHVF*DSHLH---GLVFLRRVCIGKSVGNL*LXIXKLLXITETEIHYW 254
           +++N       ++H + + H+    GLVF + + + K  G       +L+ I ETE HY 
Sbjct: 268 DYLNISWPVTPNIHFYKEEHMEDIIGLVF-KYILLLKENGIHEWIYDELVAINETEFHYQ 326

Query: 253 SPLHFYSYMS 224
             +H  SY++
Sbjct: 327 DKVHPISYVT 336


>01_06_0916 +
           32950575-32950656,32952061-32952272,32952408-32952448,
           32952916-32952959,32953259-32953561,32954145-32954302,
           32954849-32954965,32955562-32955747,32955872-32956031,
           32956079-32956151,32958613-32958889,32959024-32959099,
           32960653-32960720,32961270-32961361,32961505-32961578,
           32961777-32961820,32962155-32962206,32962585-32962704,
           32962777-32962889,32963023-32963110,32963492-32963577,
           32964172-32964258,32964491-32964594,32964996-32965098,
           32965250-32965345,32965456-32965645,32965777-32965838,
           32966014-32966118,32966782-32966983,32967092-32967300,
           32968510-32968673,32968799-32968850,32968935-32969021,
           32969319-32969441,32969567-32969605,32969606-32969860
          Length = 1447

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
 Frame = -2

Query: 391 SVHVF*DSHLH---GLVFLRRVCIGKSVGNL*LXIXKLLXITETEIHYWSPLHFYSYMS 224
           ++H + + H+    GLVF + + + K  G       +L+ I ETE HY   +H  SY++
Sbjct: 787 NIHFYKEEHMEDIIGLVF-KYILLLKENGIHEWIFDELVAINETEFHYQDKVHPISYVT 844


>12_02_0998 +
           25126114-25126596,25129213-25129339,25129349-25129459,
           25130122-25130270,25130356-25130643,25130753-25130941,
           25131445-25131619,25132219-25132316
          Length = 539

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -2

Query: 85  PGINKITEYNTAVYGTECPPIGRPP 11
           P + K   Y  + YG + PP G PP
Sbjct: 349 PPVEKQPHYGISSYGRDAPPTGAPP 373


>12_01_0049 + 417325-419068,419667-420307
          Length = 794

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 48  TAVLYSVILLIPGSARAELSHHRHVNDTA 134
           T +L   + L+P  A A  +HH H++D A
Sbjct: 14  TLLLLLTVTLLPSLAAAAAAHHHHLHDHA 42


>11_01_0047 + 358370-360107,360713-361353
          Length = 792

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
 Frame = +3

Query: 48  TAVLYSVILLIPGSARAELSHHRHVN---DTAVXPKRDYK 158
           T  L   + L+P  A A  +HH HV+   D  V  + DY+
Sbjct: 14  TLFLLLTVTLLPSLAAAAAAHHHHVHAAGDGVVISQADYQ 53


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,694,447
Number of Sequences: 37544
Number of extensions: 206425
Number of successful extensions: 385
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 385
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)