Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2289
         (550 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch...    77   2e-15
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo...    77   2e-15
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |...    25   5.6  

>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 294

 Score = 77.0 bits (181), Expect = 2e-15
 Identities = 32/45 (71%), Positives = 37/45 (82%)
 Frame = +1

Query: 67  SXYQVKFKRRREGKTDYYARKRLVVHDKNKYNTPKYRLIXRISNK 201
           S YQ K++RRREGKTDYYARKRL+   KNKYN PKYRL+ R SN+
Sbjct: 14  SRYQTKYRRRREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNR 58



 Score = 65.3 bits (152), Expect = 6e-12
 Identities = 31/83 (37%), Positives = 45/83 (54%)
 Frame = +2

Query: 206 VTCXVAYSRIEGDHIVCAAYSHELPRYGVXVGLTNYAAAYSTGLLLAXRLXXRXXXXXXX 385
           VTC +  SR+ GD+++  A+S ELPRYG+  GL N+ AAY+TGLL+A R   +       
Sbjct: 60  VTCQIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWTAAYATGLLVARRALAKVGLADKY 119

Query: 386 XXXXXXXXXEYNVEPVDNGPXAF 454
                        E +++GP  F
Sbjct: 120 EGVTEPEGEFELTEAIEDGPRPF 142



 Score = 36.3 bits (80), Expect = 0.003
 Identities = 15/21 (71%), Positives = 18/21 (85%)
 Frame = +3

Query: 462 YLDVGLARTTTGXRXFGALKG 524
           +LDVGL RT+TG R FGA+KG
Sbjct: 145 FLDVGLKRTSTGSRVFGAMKG 165


>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score = 77.0 bits (181), Expect = 2e-15
 Identities = 32/45 (71%), Positives = 37/45 (82%)
 Frame = +1

Query: 67  SXYQVKFKRRREGKTDYYARKRLVVHDKNKYNTPKYRLIXRISNK 201
           S YQ K++RRREGKTDYYARKRL+   KNKYN PKYRL+ R SN+
Sbjct: 14  SRYQTKYRRRREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNR 58



 Score = 65.3 bits (152), Expect = 6e-12
 Identities = 31/83 (37%), Positives = 45/83 (54%)
 Frame = +2

Query: 206 VTCXVAYSRIEGDHIVCAAYSHELPRYGVXVGLTNYAAAYSTGLLLAXRLXXRXXXXXXX 385
           VTC +  SR+ GD+++  A+S ELPRYG+  GL N+ AAY+TGLL+A R   +       
Sbjct: 60  VTCQIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWTAAYATGLLVARRALAKVGLADKY 119

Query: 386 XXXXXXXXXEYNVEPVDNGPXAF 454
                        E +++GP  F
Sbjct: 120 EGVTEPEGEFELTEAIEDGPRPF 142



 Score = 36.3 bits (80), Expect = 0.003
 Identities = 15/21 (71%), Positives = 18/21 (85%)
 Frame = +3

Query: 462 YLDVGLARTTTGXRXFGALKG 524
           +LDVGL RT+TG R FGA+KG
Sbjct: 145 FLDVGLKRTSTGSRVFGAMKG 165


>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 649

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +1

Query: 49  VTNNTSSXY-QVKFKRRREGKTDYYARKRLVVHDKNKYN 162
           +T +  S Y Q+K K+ ++ K+    RKRLV  D    N
Sbjct: 275 ITGSEQSDYRQIKIKKSKKKKSKSDRRKRLVELDAENEN 313


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,819,381
Number of Sequences: 5004
Number of extensions: 30931
Number of successful extensions: 79
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)