Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2289
         (550 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1660 + 38966999-38967001,38967685-38967757,38967841-389679...    83   1e-16
01_06_1659 + 38961637-38961639,38962361-38962433,38962531-389626...    83   1e-16

>01_06_1660 +
           38966999-38967001,38967685-38967757,38967841-38967923,
           38968042-38968168,38968260-38968339,38968428-38968544,
           38968711-38968845,38969046-38969215,38969300-38969417
          Length = 301

 Score = 83.0 bits (196), Expect = 1e-16
 Identities = 40/79 (50%), Positives = 48/79 (60%)
 Frame = +2

Query: 200 KDVTCXVAYSRIEGDHIVCAAYSHELPRYGVXVGLTNYAAAYSTGLLLAXRLXXRXXXXX 379
           KD+T  + Y+ I GD ++ AAYSHELPRYG+ VGLTNYAAAY TGLLLA R+        
Sbjct: 56  KDITAQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKLRGLDQ 115

Query: 380 XXXXXXXXXXXEYNVEPVD 436
                      +Y VEP D
Sbjct: 116 EYEGNIEATGEDYYVEPAD 134



 Score = 66.9 bits (156), Expect = 1e-11
 Identities = 30/44 (68%), Positives = 33/44 (75%)
 Frame = +1

Query: 52  TNNTSSXYQVKFKRRREGKTDYYARKRLVVHDKNKYNTPKYRLI 183
           TN     +QVKFKRRR+GKTDY AR RL   DKNKYNTPKYR +
Sbjct: 10  TNAYHKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFV 53



 Score = 37.5 bits (83), Expect = 0.007
 Identities = 17/20 (85%), Positives = 17/20 (85%)
 Frame = +3

Query: 465 LDVGLARTTTGXRXFGALKG 524
           LDVGL RTTTG R FGALKG
Sbjct: 143 LDVGLIRTTTGNRVFGALKG 162


>01_06_1659 +
           38961637-38961639,38962361-38962433,38962531-38962613,
           38962732-38962858,38962950-38963029,38963112-38963228,
           38963393-38963527,38963714-38963883,38963970-38964087
          Length = 301

 Score = 83.0 bits (196), Expect = 1e-16
 Identities = 40/79 (50%), Positives = 48/79 (60%)
 Frame = +2

Query: 200 KDVTCXVAYSRIEGDHIVCAAYSHELPRYGVXVGLTNYAAAYSTGLLLAXRLXXRXXXXX 379
           KD+T  + Y+ I GD ++ AAYSHELPRYG+ VGLTNYAAAY TGLLLA R+        
Sbjct: 56  KDITAQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLTLRGLDQ 115

Query: 380 XXXXXXXXXXXEYNVEPVD 436
                      +Y VEP D
Sbjct: 116 EYEGNVEATGEDYYVEPAD 134



 Score = 64.9 bits (151), Expect = 4e-11
 Identities = 28/37 (75%), Positives = 31/37 (83%)
 Frame = +1

Query: 73  YQVKFKRRREGKTDYYARKRLVVHDKNKYNTPKYRLI 183
           +QVKFKRRR+GKTDY AR RL   DKNKYNTPKYR +
Sbjct: 17  FQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFV 53



 Score = 37.5 bits (83), Expect = 0.007
 Identities = 17/20 (85%), Positives = 17/20 (85%)
 Frame = +3

Query: 465 LDVGLARTTTGXRXFGALKG 524
           LDVGL RTTTG R FGALKG
Sbjct: 143 LDVGLIRTTTGNRVFGALKG 162


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,498,194
Number of Sequences: 37544
Number of extensions: 191162
Number of successful extensions: 320
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 310
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 320
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)