Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2289
         (550 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49967-5|CAA90251.1|  293|Caenorhabditis elegans Hypothetical pr...    85   4e-17

>Z49967-5|CAA90251.1|  293|Caenorhabditis elegans Hypothetical
           protein F54C9.5 protein.
          Length = 293

 Score = 84.6 bits (200), Expect = 4e-17
 Identities = 42/76 (55%), Positives = 49/76 (64%)
 Frame = +2

Query: 200 KDVTCXVAYSRIEGDHIVCAAYSHELPRYGVXVGLTNYAAAYSTGLLLAXRLXXRXXXXX 379
           KDV   +AYS+IEGD +V +AYSHELPRYG+ VGLTNYAAAY+TGLLLA R         
Sbjct: 58  KDVVAQLAYSKIEGDVVVASAYSHELPRYGLKVGLTNYAAAYATGLLLARRHLKTIGLDS 117

Query: 380 XXXXXXXXXXXEYNVE 427
                      +YNVE
Sbjct: 118 TYKGHEELTGEDYNVE 133



 Score = 83.8 bits (198), Expect = 7e-17
 Identities = 37/43 (86%), Positives = 39/43 (90%)
 Frame = +1

Query: 73  YQVKFKRRREGKTDYYARKRLVVHDKNKYNTPKYRLIXRISNK 201
           YQVK +RRREGKTDYYARKRL V DKNKYNTPKYRLI RI+NK
Sbjct: 16  YQVKLRRRREGKTDYYARKRLTVQDKNKYNTPKYRLIVRITNK 58



 Score = 33.1 bits (72), Expect = 0.14
 Identities = 13/20 (65%), Positives = 16/20 (80%)
 Frame = +3

Query: 465 LDVGLARTTTGXRXFGALKG 524
           LD+GLARTTTG + F  +KG
Sbjct: 145 LDIGLARTTTGSKIFAVMKG 164


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,045,837
Number of Sequences: 27780
Number of extensions: 174009
Number of successful extensions: 322
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 322
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)