Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2288
         (790 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1361 - 36663859-36663985,36664353-36664543,36664746-366650...   167   7e-42
03_06_0026 - 31118997-31119113,31119700-31119900,31120032-311202...   149   2e-36
10_08_0040 + 14360543-14361778,14361787-14362782,14362791-14363657     29   3.2  
02_01_0426 + 3113443-3114220,3119557-3119693,3119831-3120817           28   9.7  

>01_06_1361 -
           36663859-36663985,36664353-36664543,36664746-36665009,
           36665215-36665373,36665476-36665679,36665765-36665983,
           36666191-36666322,36666406-36666523,36666670-36666854,
           36667263-36667355,36667819-36668008,36668500-36668585,
           36668671-36668847,36669141-36669320,36669423-36669623
          Length = 841

 Score =  167 bits (407), Expect = 7e-42
 Identities = 80/190 (42%), Positives = 110/190 (57%), Gaps = 1/190 (0%)
 Frame = +3

Query: 177 PRDYYFALAHTVKDHLVSRWIRTQQYYYENDPKRVYYLSLEYYMGRSLQNTMINLGIQGT 356
           P   +++ A +V+DHLV RW  T  ++++ DPK+ YYLS+EY  GR+L N + NLGI G 
Sbjct: 50  PEQAFYSTAESVRDHLVQRWNETYLHFHKTDPKQTYYLSMEYLQGRALTNAVGNLGITGA 109

Query: 357 VDEALYQXXXXXXXXXXXXXXXXXXXXXXXRLAACFLDSMATLGLAAYGYGIRYEYGIFA 536
             EA+ +                       RLA+CFLDSMATL L A+GYG+RY YG+F 
Sbjct: 110 YAEAVKKFGYELEALVGQEKDAALGNGGLGRLASCFLDSMATLNLPAWGYGLRYRYGLFK 169

Query: 537 QKIENGEQQEEPDDWLRFGNPWEKARPEFMLPVNFYGSVVDTPDG-KKWIDTQXGFAMPY 713
           Q I    Q+E  +DWL   +PWE  R + + P+ F+G V   PDG +KW+  +   A+ Y
Sbjct: 170 QCITKEGQEEIAEDWLEKFSPWEIVRHDIVYPIRFFGHVEILPDGSRKWVGGEVLNALAY 229

Query: 714 DNPIXGYNNK 743
           D PI GY  K
Sbjct: 230 DVPIPGYKTK 239


>03_06_0026 -
           31118997-31119113,31119700-31119900,31120032-31120218,
           31120339-31120415,31120738-31120815,31120858-31120974,
           31121047-31121175,31121327-31121479,31121589-31122044,
           31122122-31122239,31122385-31122575,31123140-31123415,
           31123524-31123700,31124040-31124141,31124227-31124459,
           31125563-31125764
          Length = 937

 Score =  149 bits (362), Expect = 2e-36
 Identities = 78/207 (37%), Positives = 105/207 (50%), Gaps = 1/207 (0%)
 Frame = +3

Query: 135 HVHYTLVKDRNVATPRDYYFALAHTVKDHLVSRWIRTQQYYYENDPKRVYYLSLEYYMGR 314
           H  +T V      +P   Y A A +V D L+  W  T  YY   + K+ YYLS+E+  GR
Sbjct: 88  HAEFTPVFSPEHFSPLKAYHATAKSVLDTLIMNWNATYDYYDRTNVKQAYYLSMEFLQGR 147

Query: 315 SLQNTMINLGIQGTVDEALYQXXXXXXXXXXXXXXXXXXXXXXXRLAACFLDSMATLGLA 494
           +L N + NL + G   EAL Q                       RLA+CFLDS+ATL   
Sbjct: 148 ALTNAVGNLELTGQYAEALQQLGHSLEDVATQEPDAALGNGGLGRLASCFLDSLATLNYP 207

Query: 495 AYGYGIRYEYGIFAQKIENGEQQEEPDDWLRFGNPWEKARPEFMLPVNFYGSVVDTPDGK 674
           A+GYG+RY++G+F        Q+E  ++WL  GNPWE  R +   PV FYG VV+  DG+
Sbjct: 208 AWGYGLRYKHGLFKANHTKDGQEEVAENWLEMGNPWEIVRTDVSYPVKFYGKVVEGTDGR 267

Query: 675 -KWIDTQXGFAMPYDNPIXGYNNKXGN 752
             WI  +    + +D PI GY  K  N
Sbjct: 268 MHWIGGENIKVVAHDIPIPGYKTKTTN 294


>10_08_0040 + 14360543-14361778,14361787-14362782,14362791-14363657
          Length = 1032

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = -1

Query: 535 ANIPYSYLIPYPYAAR 488
           AN PYSY IP PY+A+
Sbjct: 106 ANYPYSYAIPVPYSAQ 121


>02_01_0426 + 3113443-3114220,3119557-3119693,3119831-3120817
          Length = 633

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 12/19 (63%), Positives = 12/19 (63%)
 Frame = +2

Query: 122 GVQSSCPLHFSERSKCCDP 178
           GVQSS P  FS   K CDP
Sbjct: 563 GVQSSYPYDFSGNPKLCDP 581


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,227,572
Number of Sequences: 37544
Number of extensions: 429450
Number of successful extensions: 953
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 949
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)