Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2287
(530 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe... 27 1.3
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c... 27 1.7
SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces... 27 2.3
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 26 3.0
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac... 25 5.3
SPBC1539.09c |trp1||anthranilate synthase component II|Schizosac... 25 5.3
SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+ antip... 25 7.0
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 25 7.0
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|... 25 9.3
SPBC16A3.12c |||triglyceride lipase-cholesterol esterase |Schizo... 25 9.3
SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pomb... 25 9.3
>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 719
Score = 27.5 bits (58), Expect = 1.3
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Frame = +1
Query: 76 ISQYKRD-SDPMQNLNDFDDNPV-EKLTNKDDCARLFEFDNDAPLIMENKDYREIVGLNR 249
++QYK + + +N +D+D+ V E N DD + D+D + + + D E R
Sbjct: 508 LAQYKAEHGEEGENGDDWDNWEVSEDGQNSDDSGGWIDVDSDDNIELSDSDEEEEKATAR 567
Query: 250 GTDDSRRTFAKPESPDYM 303
D + + ++ E D M
Sbjct: 568 KESDEKGSSSQKELVDRM 585
>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 606
Score = 27.1 bits (57), Expect = 1.7
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = -2
Query: 364 VPWLCSYNESACPVGLFQSRACNQGFLAS 278
V W YN+S+C V L S NQ S
Sbjct: 524 VEWQLLYNDSSCDVPLLSSLVTNQTLFGS 552
>SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 618
Score = 26.6 bits (56), Expect = 2.3
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +2
Query: 257 TIPDEHSRSQKALITCTTLE*AYRTCRFVIRTKP 358
T P + R++KA + C A+ CR R KP
Sbjct: 545 TDPFSNKRTRKAALWCVLTADAWLRCRIPFRAKP 578
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 26.2 bits (55), Expect = 3.0
Identities = 14/51 (27%), Positives = 23/51 (45%)
Frame = +1
Query: 262 SRRTFAKPESPDYMHDSGIGLPDMQIRYKNKAKEPKGDFVESANQNKPSSS 414
+RR F K + SG LP+ + +E K E +++ PS+S
Sbjct: 20 NRRRFQKSQKKSISPSSGSELPNFKTTISQNNEEVKTSLKEDSSKFHPSAS 70
>SPAC23C4.02 |crn1||actin binding protein, coronin
Crn1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 25.4 bits (53), Expect = 5.3
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = +1
Query: 382 ESANQNKPSSSPEXKRATIVGNPDVSHAEE 471
ESA + KPS PE K T P S EE
Sbjct: 440 ESAEEQKPSKEPEVKPTT----PSASKVEE 465
>SPBC1539.09c |trp1||anthranilate synthase component
II|Schizosaccharomyces pombe|chr 2|||Manual
Length = 759
Score = 25.4 bits (53), Expect = 5.3
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +1
Query: 313 GIGLPDMQIRYKNKAKEPKGDFVESANQNKPSSSPEXKRAT 435
G+ + D+Q P +F E Q+KP+ E KRA+
Sbjct: 277 GLSVGDLQTYLNLNIAPPCINFYERLKQSKPALMAEVKRAS 317
>SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+
antiporter Sod22|Schizosaccharomyces pombe|chr
1|||Manual
Length = 759
Score = 25.0 bits (52), Expect = 7.0
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = -3
Query: 486 GGVAALLGVRNIRVAYYSGAFXFGRAAWF 400
GG+ ++GV ++ V++ +GA F +WF
Sbjct: 256 GGIGTIIGVDDLLVSFCAGA-AFSWDSWF 283
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 25.0 bits (52), Expect = 7.0
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = +1
Query: 325 PDMQIRYKNKAKEPKGDFVESANQNKPSSSPEXKRATIVGN 447
P+ K PKG S ++N+ SSP A+I+ +
Sbjct: 142 PERTFASDAKNHSPKGPTTTSFSRNETQSSPHSHSASIISD 182
>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1372
Score = 24.6 bits (51), Expect = 9.3
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = -1
Query: 119 FKFCIGSESRLY 84
FKFC GSES +Y
Sbjct: 852 FKFCSGSESEVY 863
>SPBC16A3.12c |||triglyceride lipase-cholesterol esterase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 443
Score = 24.6 bits (51), Expect = 9.3
Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +1
Query: 148 LTNKDDCARLFEFDNDAPLIMENKDYREIVGLNRGTDDSRRTFA-KPESPDYMHDS 312
+TN + + E + P ++ Y +G NRG SR+ KP+ ++ + S
Sbjct: 124 MTNSELWVAVNESERSLPFVLIESGYDVWLGNNRGNKYSRKHITYKPKDEEFWNFS 179
>SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 967
Score = 24.6 bits (51), Expect = 9.3
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +2
Query: 125 LMITRLRNSRTRTIALAC 178
L+++RL+NSRT L C
Sbjct: 766 LLLSRLKNSRTERFVLRC 783
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.311 0.132 0.379
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,090,145
Number of Sequences: 5004
Number of extensions: 42973
Number of successful extensions: 110
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
- SilkBase 1999-2023 -