Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2287
(530 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0026 - 14045653-14045874,14047023-14047215,14047518-140476... 29 1.8
04_04_0564 - 26261199-26261508,26261605-26261697,26262150-262622... 29 3.1
03_05_0613 + 26124714-26124857,26125692-26126330,26126455-261266... 29 3.1
02_05_0672 + 30775458-30775523,30775594-30775662,30775748-307757... 28 4.1
07_01_0139 - 1014952-1015165,1015271-1015350,1015420-1015629,101... 27 7.1
11_06_0284 + 21909758-21913645 27 9.4
06_03_1457 - 30287185-30287287,30287691-30287759,30288212-302883... 27 9.4
06_02_0192 + 12872611-12872979 27 9.4
02_05_0135 - 26165263-26165284,26165400-26165458,26165506-261657... 27 9.4
01_01_0994 - 7861310-7862119,7862378-7862498,7862718-7862901,786... 27 9.4
01_01_0115 - 856957-858055,858479-858538,858802-859583 27 9.4
>02_03_0026 - 14045653-14045874,14047023-14047215,14047518-14047618,
14050145-14050272,14050409-14050502,14050749-14051237,
14052622-14052915,14053602-14053732,14053829-14055440,
14055539-14055651,14055902-14056933,14057023-14057145,
14057250-14057688
Length = 1656
Score = 29.5 bits (63), Expect = 1.8
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +1
Query: 22 DRIIDLNKTDAPYVTSRDISQYKRDSDPMQNLNDFDDNPVE 144
D IID N + A Y+++R I K D N N D PV+
Sbjct: 1145 DEIIDNNASSASYMSTRAILSTKNDYVDKLNANMIDRFPVQ 1185
>04_04_0564 -
26261199-26261508,26261605-26261697,26262150-26262295,
26262400-26262720,26263184-26263272,26263466-26263654,
26265546-26265804
Length = 468
Score = 28.7 bits (61), Expect = 3.1
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = -1
Query: 254 VPLFSPTISL*SLFSMIRGASLSNSNRR 171
VPLF+P SL L+ +RG+SL S R
Sbjct: 441 VPLFAPRRSLAMLYHFLRGSSLPASRSR 468
>03_05_0613 +
26124714-26124857,26125692-26126330,26126455-26126695,
26126913-26127496
Length = 535
Score = 28.7 bits (61), Expect = 3.1
Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Frame = +1
Query: 70 RDISQYKRDSDPMQ--NLNDFDDNPVEKLTNKDDCARLFEFDNDAPLIMENKD 222
+DI+ Y++DS + N+ + D VE NK+ FE+ +D +++N+D
Sbjct: 411 QDIN-YRKDSYTYEDDNMEELDQKKVECEPNKEAALEKFEWISDDENVLDNED 462
>02_05_0672 +
30775458-30775523,30775594-30775662,30775748-30775797,
30775869-30775929,30776016-30776381,30776542-30776754,
30776826-30777056,30777502-30777615,30777703-30778495,
30778535-30778905,30779007-30779378,30779448-30780438,
30781068-30781141,30781953-30782030,30782448-30782525
Length = 1308
Score = 28.3 bits (60), Expect = 4.1
Identities = 27/124 (21%), Positives = 45/124 (36%), Gaps = 3/124 (2%)
Frame = +1
Query: 79 SQYKRDSD---PMQNLNDFDDNPVEKLTNKDDCARLFEFDNDAPLIMENKDYREIVGLNR 249
SQY D P + +D + P ++DD + + D P++ K GL
Sbjct: 551 SQYDEDESNAGPGVDSSDIEMEPEMDTDSEDDDSVYETTEEDGPVLAFLKGAEGSSGLKA 610
Query: 250 GTDDSRRTFAKPESPDYMHDSGIGLPDMQIRYKNKAKEPKGDFVESANQNKPSSSPEXKR 429
R +PES D ++ I + +K EP+ S P+ +R
Sbjct: 611 SFKAISRVSGEPESTDVPSNATILEESSHVPCTSKCTEPRSVSHASQQLRVFQDIPDGER 670
Query: 430 ATIV 441
+V
Sbjct: 671 LVVV 674
>07_01_0139 -
1014952-1015165,1015271-1015350,1015420-1015629,
1015925-1016044,1016650-1016709,1017129-1017204,
1018189-1018352,1018428-1018490,1018815-1018902,
1018997-1019647,1019965-1020449
Length = 736
Score = 27.5 bits (58), Expect = 7.1
Identities = 15/57 (26%), Positives = 25/57 (43%)
Frame = +1
Query: 265 RRTFAKPESPDYMHDSGIGLPDMQIRYKNKAKEPKGDFVESANQNKPSSSPEXKRAT 435
RR + ++ D G+GL + + N + P+G SA P S P + A+
Sbjct: 57 RRQLTRQRKLRHVDDIGVGLESLGLVVANSSPPPRGRASTSAAVGHPVSIPIARSAS 113
>11_06_0284 + 21909758-21913645
Length = 1295
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +1
Query: 94 DSDPMQNLNDFDDNPVEKLTNKDDCARLFEFDNDAPLIMENKDYREIV 237
D D + +D+DDN EK + DD + D+D P+ + Y +I+
Sbjct: 518 DDDDDYDDDDYDDNEEEKKYDDDDDD---DDDDDDPIHLHTAQYMQIL 562
>06_03_1457 -
30287185-30287287,30287691-30287759,30288212-30288351,
30288447-30288641,30288743-30289363,30289688-30290257,
30290332-30293638,30293764-30293863,30293978-30295014,
30295256-30295604,30296299-30296374,30296456-30297022,
30297094-30297238,30298281-30298405,30298491-30298582,
30298646-30298828,30298946-30299058,30299499-30299649,
30299720-30299882
Length = 2701
Score = 27.1 bits (57), Expect = 9.4
Identities = 8/23 (34%), Positives = 12/23 (52%)
Frame = -2
Query: 397 FGLQTRQNLLWVPWLCSYNESAC 329
F ++Q L W+PW+C C
Sbjct: 496 FSRISKQVLSWIPWICKQTTKIC 518
>06_02_0192 + 12872611-12872979
Length = 122
Score = 27.1 bits (57), Expect = 9.4
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = +3
Query: 207 HGEQGLQRDSGTEQRYRRFPTNIREARKP*LHARLWNRPTGHA 335
HG + +R SGT++ RR PT+ R R + AR W G A
Sbjct: 63 HGRRSGRRSSGTKKIRRRSPTSDRGGRGGAV-ARGWPMTGGEA 104
>02_05_0135 -
26165263-26165284,26165400-26165458,26165506-26165721,
26166309-26166362,26167029-26167123,26167220-26167317,
26167413-26167555,26167900-26168031,26168695-26168823,
26169370-26169831
Length = 469
Score = 27.1 bits (57), Expect = 9.4
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +2
Query: 407 AALPKXNAPL**ATRMFLTPRSAATPPAEXLGTSTT 514
AA P ++PL +TR F+ PR + PA + S+T
Sbjct: 2 AAPPTPSSPLVASTRRFVAPRLRSLLPAAAVSMSST 37
>01_01_0994 -
7861310-7862119,7862378-7862498,7862718-7862901,
7862975-7863070,7863428-7863476,7863555-7863596,
7863684-7863836,7865631-7865705,7866462-7866587
Length = 551
Score = 27.1 bits (57), Expect = 9.4
Identities = 10/41 (24%), Positives = 22/41 (53%)
Frame = +1
Query: 298 YMHDSGIGLPDMQIRYKNKAKEPKGDFVESANQNKPSSSPE 420
Y+H G G+P K +A+ P + + +++K + +P+
Sbjct: 337 YVHRPGTGVPKTWESRKGRARNPDTEIYKEVDKSKDAPTPK 377
>01_01_0115 - 856957-858055,858479-858538,858802-859583
Length = 646
Score = 27.1 bits (57), Expect = 9.4
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 193 DAPLIMENKDYREIVGLNRG 252
D PL++EN Y ++V L RG
Sbjct: 214 DRPLVLENASYADVVKLMRG 233
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.311 0.132 0.379
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,811,005
Number of Sequences: 37544
Number of extensions: 282520
Number of successful extensions: 595
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
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