Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2287
         (530 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66515-12|CAC42333.1|  860|Caenorhabditis elegans Hypothetical p...    29   1.6  
Z66515-11|CAA91354.1|  858|Caenorhabditis elegans Hypothetical p...    29   1.6  
Z48178-11|CAC42247.1|  860|Caenorhabditis elegans Hypothetical p...    29   1.6  
Z48178-10|CAA88206.1|  858|Caenorhabditis elegans Hypothetical p...    29   1.6  
Z81096-8|CAD54149.2|  922|Caenorhabditis elegans Hypothetical pr...    28   3.6  
Z78065-11|CAD54155.2|  922|Caenorhabditis elegans Hypothetical p...    28   3.6  
U28928-6|AAA68338.1|  188|Caenorhabditis elegans Hypothetical pr...    28   4.8  
Z83129-3|CAB05641.1|  300|Caenorhabditis elegans Hypothetical pr...    27   8.4  
Z73424-6|CAI06058.1|  326|Caenorhabditis elegans Hypothetical pr...    27   8.4  
U40952-2|AAA81737.1|  818|Caenorhabditis elegans Hypothetical pr...    27   8.4  
AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical ...    27   8.4  

>Z66515-12|CAC42333.1|  860|Caenorhabditis elegans Hypothetical
           protein C05C10.6b protein.
          Length = 860

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 12/85 (14%)
 Frame = +1

Query: 82  QYKRDSDPMQNLNDF--DDN-PV---EKLTN--KDDC--ARLFEFDNDAPLIMENKDYRE 231
           +YK+ +DP     +F  ++N P+   E++T   KD    AR F+  +   +I++ K+Y  
Sbjct: 376 KYKKGTDPGLCAQEFLSENNLPIHYLEEITRFIKDRIPEARAFDLKSGKKVIVDGKEYDY 435

Query: 232 IVGLN--RGTDDSRRTFAKPESPDY 300
            +G+N  +G  D +  F   ESP +
Sbjct: 436 ALGVNFGKGEPDKQMPFNVNESPQF 460


>Z66515-11|CAA91354.1|  858|Caenorhabditis elegans Hypothetical
           protein C05C10.6a protein.
          Length = 858

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 12/85 (14%)
 Frame = +1

Query: 82  QYKRDSDPMQNLNDF--DDN-PV---EKLTN--KDDC--ARLFEFDNDAPLIMENKDYRE 231
           +YK+ +DP     +F  ++N P+   E++T   KD    AR F+  +   +I++ K+Y  
Sbjct: 374 KYKKGTDPGLCAQEFLSENNLPIHYLEEITRFIKDRIPEARAFDLKSGKKVIVDGKEYDY 433

Query: 232 IVGLN--RGTDDSRRTFAKPESPDY 300
            +G+N  +G  D +  F   ESP +
Sbjct: 434 ALGVNFGKGEPDKQMPFNVNESPQF 458


>Z48178-11|CAC42247.1|  860|Caenorhabditis elegans Hypothetical
           protein C05C10.6b protein.
          Length = 860

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 12/85 (14%)
 Frame = +1

Query: 82  QYKRDSDPMQNLNDF--DDN-PV---EKLTN--KDDC--ARLFEFDNDAPLIMENKDYRE 231
           +YK+ +DP     +F  ++N P+   E++T   KD    AR F+  +   +I++ K+Y  
Sbjct: 376 KYKKGTDPGLCAQEFLSENNLPIHYLEEITRFIKDRIPEARAFDLKSGKKVIVDGKEYDY 435

Query: 232 IVGLN--RGTDDSRRTFAKPESPDY 300
            +G+N  +G  D +  F   ESP +
Sbjct: 436 ALGVNFGKGEPDKQMPFNVNESPQF 460


>Z48178-10|CAA88206.1|  858|Caenorhabditis elegans Hypothetical
           protein C05C10.6a protein.
          Length = 858

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 12/85 (14%)
 Frame = +1

Query: 82  QYKRDSDPMQNLNDF--DDN-PV---EKLTN--KDDC--ARLFEFDNDAPLIMENKDYRE 231
           +YK+ +DP     +F  ++N P+   E++T   KD    AR F+  +   +I++ K+Y  
Sbjct: 374 KYKKGTDPGLCAQEFLSENNLPIHYLEEITRFIKDRIPEARAFDLKSGKKVIVDGKEYDY 433

Query: 232 IVGLN--RGTDDSRRTFAKPESPDY 300
            +G+N  +G  D +  F   ESP +
Sbjct: 434 ALGVNFGKGEPDKQMPFNVNESPQF 458


>Z81096-8|CAD54149.2|  922|Caenorhabditis elegans Hypothetical
           protein T09E8.1c protein.
          Length = 922

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
 Frame = +1

Query: 121 DFDDNPVEKLTNKDDCARLFEFDNDAPLIMENKDYREI----VGLNRGTDDSRR 270
           DFD++ V+ + +    +R+F  DN      +N+  R+     V L +  D SRR
Sbjct: 209 DFDNDDVKSVISSASTSRIFSVDNRMSKYQKNQSLRQFLNSPVRLRKRGDTSRR 262


>Z78065-11|CAD54155.2|  922|Caenorhabditis elegans Hypothetical
           protein T09E8.1c protein.
          Length = 922

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
 Frame = +1

Query: 121 DFDDNPVEKLTNKDDCARLFEFDNDAPLIMENKDYREI----VGLNRGTDDSRR 270
           DFD++ V+ + +    +R+F  DN      +N+  R+     V L +  D SRR
Sbjct: 209 DFDNDDVKSVISSASTSRIFSVDNRMSKYQKNQSLRQFLNSPVRLRKRGDTSRR 262


>U28928-6|AAA68338.1|  188|Caenorhabditis elegans Hypothetical
           protein C44B7.7 protein.
          Length = 188

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = +3

Query: 246 QRYRRFPTNIREARKP*LHARLWNRPTGHADSL*EQSQGTQRRFCRVCKPK 398
           +R++     I+EA    +   +W  P  ++DSL EQ  G  R    V  PK
Sbjct: 65  ERWQGALATIKEAEGKEVWGCVWKMPNEYSDSLDEQEFGYHRLMVPVQTPK 115


>Z83129-3|CAB05641.1|  300|Caenorhabditis elegans Hypothetical
           protein W06G6.6 protein.
          Length = 300

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = -3

Query: 387 RLDKISFGFLGFVLITNLH--VR*AYSRVVHVIRAFWL 280
           RL   +FG+L F+L+  +H  +  +Y R  H+  + WL
Sbjct: 130 RLSSYAFGYLIFILMLTVHSLISYSYYREYHLEDSTWL 167


>Z73424-6|CAI06058.1|  326|Caenorhabditis elegans Hypothetical
           protein C44B9.6 protein.
          Length = 326

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +1

Query: 169 ARLFEFDNDAPLIMENKDYREIVGLNRGTDDSRRTF 276
           AR F+F     +  E +D++ +VGLN    ++R TF
Sbjct: 151 ARRFDFLTLEQITWETRDFQSLVGLNFKHLETRSTF 186


>U40952-2|AAA81737.1|  818|Caenorhabditis elegans Hypothetical
           protein C03B1.7 protein.
          Length = 818

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +1

Query: 25  RIIDLNKTDAPYVTSRDISQYKRDSDPMQNLNDFDDNPVEKLT 153
           RII  N +D P   S+D+       D + N  D  +N  EK +
Sbjct: 42  RIIKFNSSDCPCGKSQDVHNISAMKDQLSNFLDKWENVHEKFS 84


>AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical
            protein F55F10.1 protein.
          Length = 4368

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 26/133 (19%), Positives = 58/133 (43%)
 Frame = +1

Query: 67   SRDISQYKRDSDPMQNLNDFDDNPVEKLTNKDDCARLFEFDNDAPLIMENKDYREIVGLN 246
            ++D+++   ++  ++ L D      E+   K+D  +  + ++D    +++ D  E    N
Sbjct: 3630 AKDVTEEMEETGQIEGLEDEQPVDSEEHEAKNDNEKPIDMEDDFAEDLQDIDKNEKGDQN 3689

Query: 247  RGTDDSRRTFAKPESPDYMHDSGIGLPDMQIRYKNKAKEPKGDFVESANQNKPSSSPEXK 426
             G D+S     +P+  D M D      + Q+  K   +E K +  +  N ++   + E +
Sbjct: 3690 DGEDESDE---EPDVEDQMGDVE-EEDEKQLDPKMWDEEEKEEQDQQKNMDQEQEAAEDQ 3745

Query: 427  RATIVGNPDVSHA 465
               +V   D + A
Sbjct: 3746 TDEMVAKEDDAQA 3758


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.311    0.132    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,638,495
Number of Sequences: 27780
Number of extensions: 245533
Number of successful extensions: 632
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 632
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1049512662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)