Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2286
         (650 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0265 + 2046918-2049102,2052385-2052452,2052542-2052652,205...    39   0.004
01_05_0521 - 22904656-22904962,22905132-22905340,22905432-229055...    37   0.016
05_06_0213 + 26414613-26414695,26416907-26417077,26417983-264182...    29   2.4  
05_03_0373 - 13194723-13195847,13196219-13196809                       28   7.4  

>03_01_0265 + 2046918-2049102,2052385-2052452,2052542-2052652,
            2053164-2053250,2053476-2053684,2054115-2054340,
            2054473-2054510,2054657-2054714,2055363-2055662,
            2055832-2055903,2055988-2056112,2056240-2056312,
            2056417-2056521
          Length = 1218

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 21/70 (30%), Positives = 34/70 (48%)
 Frame = +3

Query: 381  KTGKLKTSFTNDTVAVNTNLDLDLAGPXVYVAAXLNYQXWLAGVHTQFDTQKAKFSKNNF 560
            K+GKL   + +D  A+N+ + L  + P + +AA +      AG    FD+  A  +K N 
Sbjct: 814  KSGKLDLQYLHDHFALNSTIGLT-STPLIELAATIGTNELSAGAEVGFDSTSASVTKYNS 872

Query: 561  AXXYQSGDFA 590
               Y   DF+
Sbjct: 873  GICYNKHDFS 882


>01_05_0521 -
           22904656-22904962,22905132-22905340,22905432-22905521,
           22905624-22905734,22906401-22906468,22906611-22906653
          Length = 275

 Score = 36.7 bits (81), Expect = 0.016
 Identities = 31/142 (21%), Positives = 60/142 (42%)
 Frame = +3

Query: 195 TXKAERFLAAFPPNLQXKTMA*LSXRSGTQXNTLXTDIXIXXKIAAGLKVTLEGTFAPQT 374
           T K E         L+ K +  +  ++ ++ + L T + +      GLK  L      Q 
Sbjct: 44  TRKNESVFGELQTQLKNKKLT-VDVKANSESDLLTT-VTVDEFGTPGLKSILSLVVPDQ- 100

Query: 375 GTKTGKLKTSFTNDTVAVNTNLDLDLAGPXVYVAAXLNYQXWLAGVHTQFDTQKAKFSKN 554
             ++GKL+  + ++   +N ++ L+ + P V ++     +    GV   FDT  + F+K 
Sbjct: 101 --RSGKLELQYLHEYAGINASVGLN-SNPMVNLSGVFGSKELSVGVDVAFDTATSNFTKY 157

Query: 555 NFAXXYQSGDFALXTNVXNGKD 620
           N A    + D     ++ N  D
Sbjct: 158 NAALSLTNSDLIASLHLNNHGD 179


>05_06_0213 +
           26414613-26414695,26416907-26417077,26417983-26418219,
           26418543-26418572,26419248-26419282,26421680-26421747,
           26423067-26423126,26423310-26423399,26423487-26423695,
           26424083-26424383
          Length = 427

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 27/107 (25%), Positives = 40/107 (37%), Gaps = 1/107 (0%)
 Frame = +3

Query: 333 GLKVTLEGTFAPQTGTKTGKLKTSFTNDTVAVNTNLDLDLAGPXVYVAAXLNYQXWLAGV 512
           GLK  L   F  Q   K+ K +  + +    +N  + L+ A P V  +       +  G 
Sbjct: 242 GLKGILSIPFPYQ---KSAKAEVQYLHPHAGLNAIVGLN-ANPLVSFSGVFGTGAFAVGT 297

Query: 513 HTQFDTQKAKFSKNNFAXXYQSGDFALXTNVXN-GKDXGGXIYXKVS 650
              FDT    F+K N    + + D      + N G       Y KVS
Sbjct: 298 DVAFDTATGDFTKYNAGLSHTTPDLTAALLLNNKGDSLAASYYHKVS 344


>05_03_0373 - 13194723-13195847,13196219-13196809
          Length = 571

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 354 GTFAPQTGTKTGKLKTSFTNDTVAVNTNLDLDL 452
           GT+  Q  T TGK+  +FT +    +  LDLD+
Sbjct: 537 GTYVAQVTTATGKMLKTFTVEKGDNSLELDLDI 569


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,039,002
Number of Sequences: 37544
Number of extensions: 226402
Number of successful extensions: 508
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)