Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2286
         (650 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58746-2|AAB00622.2|  283|Caenorhabditis elegans Hypothetical pr...    70   2e-12

>U58746-2|AAB00622.2|  283|Caenorhabditis elegans Hypothetical
           protein R05G6.7 protein.
          Length = 283

 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 36/121 (29%), Positives = 58/121 (47%)
 Frame = +3

Query: 288 NTLXTDIXIXXKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTNDTVAVNTNLDLDLAGPXV 467
           N L T I +  +   GLKVTL+  +AP  G ++GK+K  +   T  V  ++ +  A P +
Sbjct: 80  NQLGTVIEVNEQFGRGLKVTLDSLYAPHAGKRSGKVKLDWALPTARVTADVGVTSA-PVI 138

Query: 468 YVAAXLNYQXWLAGVHTQFDTQKAKFSKNNFAXXYQSGDFALXTNVXNGKDXGGXIYXKV 647
             A   +   WL G    FD+   K +  + A  + +  + L + V N  D G  +Y KV
Sbjct: 139 NAAGVFSRDGWLIGAAATFDSSSNKLAATSLAFGHSTPQYTLHSFVINSTDFGASLYHKV 198

Query: 648 S 650
           +
Sbjct: 199 A 199



 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 19/39 (48%), Positives = 24/39 (61%)
 Frame = +2

Query: 167 VEFTSGITSNQXSGKVFGSLSSKFAXKDYGLTFTXKWNT 283
           VEF S  + N  SGK+ G+L  K+    YG+T T KWNT
Sbjct: 40  VEFKSAASHNIGSGKLGGNLDVKYKIPQYGITLTEKWNT 78



 Score = 35.1 bits (77), Expect = 0.044
 Identities = 15/29 (51%), Positives = 21/29 (72%)
 Frame = +1

Query: 49  MAPPYYADAW*RKANDVFSKGYHFGVFKL 135
           MAPP +AD   + A D+F+KGY+FG  K+
Sbjct: 1   MAPPTFADLG-KSAKDLFNKGYNFGFLKI 28


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,833,946
Number of Sequences: 27780
Number of extensions: 195089
Number of successful extensions: 394
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 393
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)