Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2281
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93395-2|CAB07705.1|  905|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z83112-5|CAB05541.1|  905|Caenorhabditis elegans Hypothetical pr...    30   1.8  
AF100656-10|AAF99967.1|  301|Caenorhabditis elegans Hypothetical...    30   1.8  
U22184-1|AAA64847.1|  348|Caenorhabditis elegans Wnt protein pro...    29   3.2  
U22179-1|AAA64846.1|  348|Caenorhabditis elegans Wnt protein pro...    29   3.2  
AC006627-1|AAK85460.1|  348|Caenorhabditis elegans Abnormal cell...    29   3.2  
U58751-5|AAN84882.1|  781|Caenorhabditis elegans Wasp (actin cyt...    28   7.4  
U53150-2|AAV28350.1|  580|Caenorhabditis elegans Hypothetical pr...    28   7.4  
AF067215-5|AAC17010.3|  441|Caenorhabditis elegans T box family ...    28   7.4  
Z11505-8|CAA77583.2|  489|Caenorhabditis elegans Hypothetical pr...    27   9.8  
AY547284-1|AAS49906.1|  489|Caenorhabditis elegans SOCS-box prot...    27   9.8  

>Z93395-2|CAB07705.1|  905|Caenorhabditis elegans Hypothetical
           protein ZC101.1 protein.
          Length = 905

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 22/64 (34%), Positives = 31/64 (48%)
 Frame = +2

Query: 128 HSPQLQAFQLQNKREQHR*QPSHHSAYLHHSEVRRAQCPLDILGPTQDVY*NGQIRHCPE 307
           H  Q Q  Q Q++++Q +    HH A  HHS+    Q P     P+QD +   + R    
Sbjct: 666 HERQQQERQQQDRQQQAQ---QHHQAQQHHSQ----QHPAQPAQPSQDHHEEHRRRLEEH 718

Query: 308 RRRE 319
           RRRE
Sbjct: 719 RRRE 722


>Z83112-5|CAB05541.1|  905|Caenorhabditis elegans Hypothetical
           protein ZC101.1 protein.
          Length = 905

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 22/64 (34%), Positives = 31/64 (48%)
 Frame = +2

Query: 128 HSPQLQAFQLQNKREQHR*QPSHHSAYLHHSEVRRAQCPLDILGPTQDVY*NGQIRHCPE 307
           H  Q Q  Q Q++++Q +    HH A  HHS+    Q P     P+QD +   + R    
Sbjct: 666 HERQQQERQQQDRQQQAQ---QHHQAQQHHSQ----QHPAQPAQPSQDHHEEHRRRLEEH 718

Query: 308 RRRE 319
           RRRE
Sbjct: 719 RRRE 722


>AF100656-10|AAF99967.1|  301|Caenorhabditis elegans Hypothetical
           protein F49F1.11 protein.
          Length = 301

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 18  ETPGGQPNTLNTFWMLSDVNLSRGLDFSDNGPVYARFTH 134
           ET GG P   NT++ ++ VN    ++   NG  +  F H
Sbjct: 163 ETYGGNPFRANTYFNVTMVNQPTHIEIHVNGAFFVNFNH 201


>U22184-1|AAA64847.1|  348|Caenorhabditis elegans Wnt protein
           protein.
          Length = 348

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +1

Query: 412 ATNSLPSITAAAAG-LSTCSCPRALKPACPSNCL 510
           ATN +P+I+ A AG +     P  LK  CPS+ L
Sbjct: 25  ATNEIPTISGAPAGKIVQPPKPNILKQGCPSDLL 58


>U22179-1|AAA64846.1|  348|Caenorhabditis elegans Wnt protein
           protein.
          Length = 348

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +1

Query: 412 ATNSLPSITAAAAG-LSTCSCPRALKPACPSNCL 510
           ATN +P+I+ A AG +     P  LK  CPS+ L
Sbjct: 25  ATNEIPTISGAPAGKIVQPPKPNILKQGCPSDLL 58


>AC006627-1|AAK85460.1|  348|Caenorhabditis elegans Abnormal cell
           lineage protein 44,isoform a protein.
          Length = 348

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +1

Query: 412 ATNSLPSITAAAAG-LSTCSCPRALKPACPSNCL 510
           ATN +P+I+ A AG +     P  LK  CPS+ L
Sbjct: 25  ATNEIPTISGAPAGKIVQPPKPNILKQGCPSDLL 58


>U58751-5|AAN84882.1|  781|Caenorhabditis elegans Wasp (actin
           cytoskeleton modulator)homolog protein 1, isoform b
           protein.
          Length = 781

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +2

Query: 137 QLQAFQLQNKREQHR*QPSHHSAYLHHSEVRRAQCP 244
           QLQ    Q +++Q   +P H S++ HH E RR + P
Sbjct: 184 QLQQQHHQQQQQQLAFRPRHRSSH-HHQEPRRHRAP 218


>U53150-2|AAV28350.1|  580|Caenorhabditis elegans Hypothetical
           protein F20A1.4 protein.
          Length = 580

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
 Frame = +1

Query: 268 RCVLKWTDSSLS*TPERIILSVSRRSLP*LFRSNRHSATYPLRAMI-HDATNSLPSITAA 444
           RC  K+     S T  R++L+   +SLP L  ++  ++  PL ++I   A   +PS+T  
Sbjct: 131 RCWDKYRRGPCSSTIVRLLLATVDKSLPMLLTTSTCASIIPLVSIIVSPAKTIIPSVTLC 190

Query: 445 AAGLSTCSC 471
              L    C
Sbjct: 191 VLNLLQNIC 199


>AF067215-5|AAC17010.3|  441|Caenorhabditis elegans T box family
           protein 32 protein.
          Length = 441

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -1

Query: 319 FSPAFRTVTNLSISIHILRWSENIQGTLRSSNFGVMK 209
           + P  R  T+  IS+ +  WS+    T+ SSN  V +
Sbjct: 144 YVPVLRFTTSSGISLEVTVWSQKFVTTMTSSNRSVKR 180


>Z11505-8|CAA77583.2|  489|Caenorhabditis elegans Hypothetical
           protein F59B2.6 protein.
          Length = 489

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +3

Query: 186 SRRTTVRIFITPKFDERNVPWIFSDQRKMCIEMD 287
           S+ T +R+F+ P      VPW++ +     I +D
Sbjct: 225 SQFTGIRVFLDPFVSSHYVPWVYRNDVNFFIRID 258


>AY547284-1|AAS49906.1|  489|Caenorhabditis elegans SOCS-box protein
           ZIF-1 protein.
          Length = 489

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +3

Query: 186 SRRTTVRIFITPKFDERNVPWIFSDQRKMCIEMD 287
           S+ T +R+F+ P      VPW++ +     I +D
Sbjct: 225 SQFTGIRVFLDPFVSSHYVPWVYRNDVNFFIRID 258


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,570,316
Number of Sequences: 27780
Number of extensions: 352831
Number of successful extensions: 1093
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1029
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1092
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)