Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2278
         (749 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein Rpp1-1|Sc...    82   7e-17
SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein Rpp1-2|S...    80   3e-16
SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein Rpp1-3|...    75   1e-14
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch...    27   2.9  
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M...    27   2.9  
SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A...    27   2.9  
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub...    27   2.9  
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2...    27   2.9  
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar...    27   3.8  
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|...    25   8.7  

>SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein
           Rpp1-1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 109

 Score = 82.2 bits (194), Expect = 7e-17
 Identities = 45/111 (40%), Positives = 61/111 (54%)
 Frame = +3

Query: 129 VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLIT 308
           +S +ELA  YSALIL D+ + +T +K+ ++ KAA VDVEP W  +FAKALEG ++++L+ 
Sbjct: 1   MSASELATSYSALILADEGIEITSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLL 60

Query: 309 NIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 461
           NIGSG                                   SD+DMGFGLFD
Sbjct: 61  NIGSGA--GAAPVAGGAAAPAAADGEAPAEEKEEAKEEEESDEDMGFGLFD 109


>SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein
           Rpp1-2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 80.2 bits (189), Expect = 3e-16
 Identities = 44/111 (39%), Positives = 60/111 (54%)
 Frame = +3

Query: 129 VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLIT 308
           +S +ELA  YSALIL D+ + +T +K+ ++ KAA VDVEP W  +FAKALEG ++++L+ 
Sbjct: 1   MSASELATSYSALILADEGIEITSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLL 60

Query: 309 NIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 461
           NIGS                                    SD+DMGFGLFD
Sbjct: 61  NIGSAA-AAPAAGGAGAPAAAAGGEAAAEEQKEEAKEEEESDEDMGFGLFD 110


>SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein
           Rpp1-3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 109

 Score = 74.9 bits (176), Expect = 1e-14
 Identities = 41/111 (36%), Positives = 59/111 (53%)
 Frame = +3

Query: 129 VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLIT 308
           +S +ELA  Y+ALIL D+ + +T +K+ ++ KA  V+VEP W  +FAKALEG ++++L+ 
Sbjct: 1   MSASELATSYAALILADEGIEITSDKLLSLTKAGNVEVEPIWATIFAKALEGKDLKELLL 60

Query: 309 NIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 461
           NIGS                                    SD+DMGFGLFD
Sbjct: 61  NIGSA--GAASAPTAAGAGAAAPAEAAEEEKKEEAKEEEESDEDMGFGLFD 109


>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 312

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 10/11 (90%), Positives = 11/11 (100%)
 Frame = +3

Query: 429 SDDDMGFGLFD 461
           SD+DMGFGLFD
Sbjct: 302 SDEDMGFGLFD 312


>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 468

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = -2

Query: 85  KREQARLSSDNKEKQERRLCSN*QFSE 5
           ++EQ RL  +N+EK++RR+ +  +  E
Sbjct: 250 RQEQFRLERENREKEKRRIAAQRKLEE 276


>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 10/11 (90%), Positives = 11/11 (100%)
 Frame = +3

Query: 429 SDDDMGFGLFD 461
           SD+DMGFGLFD
Sbjct: 100 SDEDMGFGLFD 110


>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 10/11 (90%), Positives = 11/11 (100%)
 Frame = +3

Query: 429 SDDDMGFGLFD 461
           SD+DMGFGLFD
Sbjct: 100 SDEDMGFGLFD 110


>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 110

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 10/11 (90%), Positives = 11/11 (100%)
 Frame = +3

Query: 429 SDDDMGFGLFD 461
           SD+DMGFGLFD
Sbjct: 100 SDEDMGFGLFD 110


>SPAC22F3.05c |alp41||ADP-ribosylation factor
           Alp41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 186

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
 Frame = +3

Query: 111 RSKLKMVSKAELACVYSALILVD-DDV--AVTGEKISTILKAAAVDVEPYWPGLFAKALE 281
           R+ L+ +   E     S L+L +  DV  A++ E+IS IL  +      +W      AL 
Sbjct: 103 RNTLQELLVEEKLLFTSILVLANKSDVSGALSSEEISKILNISKYK-SSHWRIFSVSALT 161

Query: 282 GINVRDLIT 308
           G+N++D I+
Sbjct: 162 GLNIKDAIS 170


>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
           Snf21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1199

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -2

Query: 169 MRAE*THANSAFDTIFS-FERASCRRP*LKREQARLSSDNKEKQER 35
           +R +  H      TI +  ER SCRRP L  +  RL ++  E+Q+R
Sbjct: 213 LRHQVMHCQPHLRTIVNAVERMSCRRPKLVPQATRL-TEVLERQQR 257


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,422,842
Number of Sequences: 5004
Number of extensions: 42331
Number of successful extensions: 100
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)