Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2273
(700 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0374 + 22649455-22650024,22650085-22650637,22650812-226511... 34 0.094
02_02_0512 + 11092907-11093204,11095454-11095580,11096016-110965... 34 0.12
09_02_0257 + 6355876-6356444,6356690-6357136,6357231-6359166 33 0.22
11_01_0311 + 2322511-2323527 33 0.29
04_04_0212 + 23646043-23646369,23646457-23647304,23647409-23649158 32 0.50
04_04_1404 + 33302080-33303341,33303435-33305307 31 0.67
11_01_0319 - 2396835-2396951,2397035-2397105,2397219-2397297,239... 30 1.5
10_08_0544 - 18655186-18655567,18656835-18657151 30 1.5
12_02_0662 + 21648616-21648766,21650071-21650198,21650598-21650882 30 2.0
08_02_1414 + 26901937-26902597,26903361-26903397,26903733-269037... 30 2.0
07_03_0669 - 20542481-20542489,20543212-20543872,20543899-205439... 29 2.7
08_02_0672 - 19904353-19904839,19905646-19905704,19906137-199063... 29 4.7
06_01_1170 - 10002650-10004122 29 4.7
12_01_0906 + 8799284-8799441,8800865-8801690,8801933-8802055,880... 28 6.2
06_03_0726 + 23904350-23904964,23905986-23906021,23906158-239062... 28 6.2
05_01_0293 + 2289124-2289324,2289452-2289544 28 6.2
04_01_0208 + 2596110-2596928 28 6.2
01_06_0693 - 31280108-31281271 28 6.2
01_01_1165 - 9267891-9268145,9268395-9268510,9268991-9269127,926... 28 6.2
04_03_0365 - 14950398-14950880,14950967-14951262,14951277-149514... 28 8.2
01_05_0222 + 19462487-19462663,19462916-19462991,19463106-194631... 28 8.2
>09_06_0374 +
22649455-22650024,22650085-22650637,22650812-22651147,
22651171-22652605,22652939-22653062
Length = 1005
Score = 34.3 bits (75), Expect = 0.094
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 4/38 (10%)
Frame = +1
Query: 361 SARPADARGRRRSA----PAEDQGDGRRETAHRKPQGS 462
S+RPADARG+R+ P+ +G G ++R+P+G+
Sbjct: 322 SSRPADARGKRKQGGTPPPSPPRGGGAARASNRRPEGA 359
>02_02_0512 +
11092907-11093204,11095454-11095580,11096016-11096560,
11096679-11096890
Length = 393
Score = 33.9 bits (74), Expect = 0.12
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +2
Query: 290 APDPCPPRPKNDVEVPPAVSSLGYLLDQQMHEGG 391
+P P PP P N+ ++P V+S G L+ + +H G
Sbjct: 209 SPSPSPPPPDNETDIPHLVASYGELVVRPLHALG 242
>09_02_0257 + 6355876-6356444,6356690-6357136,6357231-6359166
Length = 983
Score = 33.1 bits (72), Expect = 0.22
Identities = 15/37 (40%), Positives = 25/37 (67%), Gaps = 4/37 (10%)
Frame = +1
Query: 364 ARPADARGRRR----SAPAEDQGDGRRETAHRKPQGS 462
+RPADARG+R+ S+P+ +G G + R+P+G+
Sbjct: 261 SRPADARGKRKQEGFSSPSPPRGGGVARVSSRRPEGA 297
>11_01_0311 + 2322511-2323527
Length = 338
Score = 32.7 bits (71), Expect = 0.29
Identities = 18/48 (37%), Positives = 25/48 (52%)
Frame = +3
Query: 315 LRMTWKFHQPCRPSAICSTSRCTRAATLRSCRGSRRWSAGDCTPEASG 458
LR+TW H P P+ + S RA LR RGSR +G + + +G
Sbjct: 79 LRLTWG-HSPLGPTLSFAPSPTARAIQLRRRRGSRSLPSGSSSGDENG 125
>04_04_0212 + 23646043-23646369,23646457-23647304,23647409-23649158
Length = 974
Score = 31.9 bits (69), Expect = 0.50
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Frame = +1
Query: 364 ARPADARGRRRS----APAEDQGDGRRETAHRKPQGS*LRSADQRHPRYRRHR 510
+RPADARG+R+ +P+ +G G + R+P+G+ S + + +R R
Sbjct: 314 SRPADARGKRKQEDTPSPSPPRGGGAVRASSRRPEGAVPTSQPEGERKKKRLR 366
>04_04_1404 + 33302080-33303341,33303435-33305307
Length = 1044
Score = 31.5 bits (68), Expect = 0.67
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Frame = +1
Query: 361 SARPADARGRRR----SAPAEDQGDGRRETAHRKPQGS*LRSADQRHPRYRRHR 510
S+RPADA+G+R+ P+ +G G + R+P+G+ S + + +R R
Sbjct: 342 SSRPADAQGKRKLGGTPPPSPPRGGGAARASSRRPEGAAPTSQPEGERKKKRLR 395
>11_01_0319 -
2396835-2396951,2397035-2397105,2397219-2397297,
2397417-2397458,2397670-2397723,2397836-2397868,
2397959-2398039,2398144-2398230,2398313-2398388,
2398633-2398808,2398912-2399034,2399249-2399361,
2399521-2399632,2400054-2400273,2401986-2402314,
2402408-2402713,2403580-2403878,2404079-2404181,
2404266-2404369,2404840-2404906,2404911-2405076,
2405241-2405956
Length = 1157
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
Frame = +1
Query: 367 RPADARGRRRSAPAEDQ----GDGRRETAHRKPQGS*LRSADQRHPRYR 501
R D R RR +P+ + GD R HR + S R DQ H R R
Sbjct: 26 RDLDTRRHRRRSPSSESCSSSGDDDRSRRHRHDESSRRRQRDQSHRRDR 74
>10_08_0544 - 18655186-18655567,18656835-18657151
Length = 232
Score = 30.3 bits (65), Expect = 1.5
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 7/64 (10%)
Frame = +2
Query: 293 PDPCPPRPKNDVE---VPPAVSSLGYLLDQQM--HEGGD--APLLQRIKEMVGGRLHTGS 451
P P PPRP+++ E +PP V LG + ++++ ++G D PLL IK + +
Sbjct: 49 PPPPPPRPRDEPEAEPLPPPV-QLGEVSEEELRQYDGSDPKKPLLMAIKGQIYDVTQSRM 107
Query: 452 LRGP 463
GP
Sbjct: 108 FYGP 111
>12_02_0662 + 21648616-21648766,21650071-21650198,21650598-21650882
Length = 187
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +2
Query: 248 LSEWLRRTQRRSRTAPDPCPPRPKNDVEVPPAVSSLG 358
+ + LR R R P P PPRP + PP+ + G
Sbjct: 1 MGQTLRGAAGRVRAPPTPAPPRPHHLPPAPPSPAGAG 37
>08_02_1414 +
26901937-26902597,26903361-26903397,26903733-26903791,
26904198-26904388,26904591-26904680,26904833-26904926,
26905008-26905159,26905250-26905347,26905400-26905459,
26905460-26905598,26905686-26905784,26905883-26906018,
26906352-26906413
Length = 625
Score = 29.9 bits (64), Expect = 2.0
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +1
Query: 106 NLCVNFVCSDHLICRYA 156
NLC +C +H +CRYA
Sbjct: 467 NLCWKLICMEHAVCRYA 483
>07_03_0669 -
20542481-20542489,20543212-20543872,20543899-20543983,
20545311-20546625
Length = 689
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3
Query: 345 CRPSAICSTSRCTRAATLRSCRGSR 419
CR ST RCT+A +R C+G++
Sbjct: 584 CRSCTSTSTLRCTQAMAIRRCQGAQ 608
>08_02_0672 -
19904353-19904839,19905646-19905704,19906137-19906352,
19906845-19907422,19907506-19908180,19908263-19908653,
19909469-19909621,19909727-19909980,19911023-19911479
Length = 1089
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Frame = +2
Query: 290 APDPCPPRPKNDVEVPP---AVSSLGYLLDQQMHEGG 391
AP P PP + V+VPP V + GY + QQM G
Sbjct: 83 APPPPPPPQQVQVQVPPQYGGVPNPGYPMAQQMQPPG 119
>06_01_1170 - 10002650-10004122
Length = 490
Score = 28.7 bits (61), Expect = 4.7
Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Frame = -2
Query: 570 LAGYTAGQLAXXVFXSPFSYPMPSIPRMSLIGR-TQLGPLRLPVCSLPPTISLILCRSGA 394
+A T+G A V PF IP + L+ G LRL V + P LIL + A
Sbjct: 1 MAPATSGSAAAHVLVIPFPAQGHLIPMLDLVRLLASRGGLRLTVVTTPAMAPLILATAAA 60
Query: 393 SPP 385
P
Sbjct: 61 VHP 63
>12_01_0906 +
8799284-8799441,8800865-8801690,8801933-8802055,
8802144-8802210,8802611-8802714,8802798-8802900,
8803103-8803401,8804009-8804263,8805471-8805776,
8805866-8806194,8806829-8806916,8807027-8807164,
8807438-8807458
Length = 938
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 382 RGRRRSAPAEDQGDGRRETAHRKPQGS*LRSADQR 486
R RR +P+ + DG R HR+ + S R D+R
Sbjct: 136 RRHRRRSPSSESSDGGRSRRHRRDESS-RRQRDER 169
>06_03_0726 +
23904350-23904964,23905986-23906021,23906158-23906256,
23906445-23906627,23907016-23907105,23907187-23907285,
23907584-23907688,23907786-23907926,23908009-23908296,
23908536-23908826
Length = 648
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 342 PCRPSAICSTSRCTRAATLRSCRGSRRWSAGD 437
PC+P +++ C+ ++ S RGS WS GD
Sbjct: 546 PCKPKTQGASTACSTSSRTMSSRGS--WSPGD 575
>05_01_0293 + 2289124-2289324,2289452-2289544
Length = 97
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = +1
Query: 373 ADARGRRRSAPAEDQGDGRRETA--HRKPQGS*LRSADQR 486
A A + P D+G GRRE A R P G+ ++S D R
Sbjct: 29 AAAAAEKAGWPTADEGGGRRELAASSRSPHGAPIQSDDFR 68
>04_01_0208 + 2596110-2596928
Length = 272
Score = 28.3 bits (60), Expect = 6.2
Identities = 27/93 (29%), Positives = 38/93 (40%), Gaps = 7/93 (7%)
Frame = +1
Query: 379 ARGRRRSAPAEDQGDGRRETAHRKPQGS*LRSA---DQRHPRYRRHRV*KGGXKYXRCKL 549
A GRR E G GRR R G+ LR + + P +RR R ++ R +
Sbjct: 132 AAGRRSGEEGEAAGGGRRGGKRRAMAGTRLRRSPCETEGRPGWRRWR-----RRWRRRRR 186
Query: 550 ARRVPG*SICFGWTQPGS----DGAXNGPSEHG 636
R V G GW +P + +G +HG
Sbjct: 187 DRPVHGRGGTGGWRRPAAWEREEGGGERARDHG 219
>01_06_0693 - 31280108-31281271
Length = 387
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
Frame = +2
Query: 239 RLELSEWLRRTQ---RRSRTAPDPCPPRPK 319
RL S RRT RRSR +P+P PP P+
Sbjct: 22 RLPFSTSSRRTPHRFRRSRRSPNPAPPSPE 51
>01_01_1165 -
9267891-9268145,9268395-9268510,9268991-9269127,
9269645-9269808,9269892-9269972,9270783-9270962,
9271489-9271929,9273234-9273344,9274355-9274463,
9274618-9274643,9274823-9274903,9275013-9275211,
9275374-9275449,9275553-9275769,9276117-9276155,
9276684-9276783,9276962-9277084,9277171-9277895
Length = 1059
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Frame = -1
Query: 316 RSRWTGVRCRSGSSLSPSQ----PFRQLESIDLSSKTWVSNPVARVLQESCTVQQMARR 152
+ R+ G+R SG + Q P ++ S+D+ S VSN +V + C + R+
Sbjct: 331 KKRYVGIRLASGQDILCQQLILDPSYEIPSLDMPSDAPVSNLPRKVARGICIISSSVRQ 389
>04_03_0365 -
14950398-14950880,14950967-14951262,14951277-14951413,
14951562-14952039,14952203-14952215
Length = 468
Score = 27.9 bits (59), Expect = 8.2
Identities = 16/44 (36%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Frame = +2
Query: 266 RTQRRSRTAPDPCPP-RPKNDVEVPPAVSSLGYLLDQQMHEGGD 394
R R TAP CPP RP + PPA D Q+ D
Sbjct: 396 RVTARPTTAPGGCPPKRPASAPSAPPAQDCHAQSYDVQLQYDTD 439
>01_05_0222 +
19462487-19462663,19462916-19462991,19463106-19463185,
19463293-19463342,19463436-19463520,19463640-19463738,
19464110-19464346
Length = 267
Score = 27.9 bits (59), Expect = 8.2
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = -1
Query: 544 CXGSIXXPLFIPYAFDTSDVVDRQNAARTPEASGVQSPADHLLDPL 407
C + PL +PYA S + R +AA++P+A + AD L PL
Sbjct: 12 CCRLVRLPLLVPYARRRSPLSTRCSAAQSPDAVD-REYADLNLRPL 56
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,289,695
Number of Sequences: 37544
Number of extensions: 438248
Number of successful extensions: 1775
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1769
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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