Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2273
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016687-11|ABL01528.1|  646|Caenorhabditis elegans Hypothetical...    30   1.4  
U40030-4|AAS80338.1|  909|Caenorhabditis elegans Hypothetical pr...    29   4.2  
U40030-3|AAS80339.1|  911|Caenorhabditis elegans Hypothetical pr...    29   4.2  
U23484-8|AAC46765.1| 1200|Caenorhabditis elegans Masculinisation...    28   7.4  
AL032637-4|CAA21619.2|  534|Caenorhabditis elegans Hypothetical ...    28   7.4  
AF286899-1|AAG01332.1| 1200|Caenorhabditis elegans sex determini...    28   7.4  
AF016672-8|AAB66117.4|  998|Caenorhabditis elegans Jnk interacti...    28   7.4  
L23646-1|AAA28041.1|  244|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>AF016687-11|ABL01528.1|  646|Caenorhabditis elegans Hypothetical
           protein T21D12.7 protein.
          Length = 646

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 19/74 (25%), Positives = 32/74 (43%)
 Frame = -2

Query: 591 CPTKTNRLAGYTAGQLAXXVFXSPFSYPMPSIPRMSLIGRTQLGPLRLPVCSLPPTISLI 412
           CP   +      +GQ A  +  +PFS P        + G T   P++ P+C     +  +
Sbjct: 494 CPDGASPFLDPNSGQPATCLASNPFSCPAEHSCTALMDGSTACCPIQTPLC-----VEAL 548

Query: 411 LCRSGASPPSCICW 370
           +   G SP +C+ W
Sbjct: 549 VSDDG-SPKTCLGW 561


>U40030-4|AAS80338.1|  909|Caenorhabditis elegans Hypothetical
           protein T13C2.6a protein.
          Length = 909

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
 Frame = +1

Query: 1   RCLLS*CCKNYKENDKCVFLQI*CFVLSACYDRRSNLCVN--FVCSDHLIC 147
           RC     CK++ +   C  +Q  C +      + S+ C+N  FVC   L C
Sbjct: 231 RCDAEVDCKDHSDEKNCTAIQHTCKLAEEFACKASHNCINKAFVCDGELDC 281


>U40030-3|AAS80339.1|  911|Caenorhabditis elegans Hypothetical
           protein T13C2.6b protein.
          Length = 911

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
 Frame = +1

Query: 1   RCLLS*CCKNYKENDKCVFLQI*CFVLSACYDRRSNLCVN--FVCSDHLIC 147
           RC     CK++ +   C  +Q  C +      + S+ C+N  FVC   L C
Sbjct: 233 RCDAEVDCKDHSDEKNCTAIQHTCKLAEEFACKASHNCINKAFVCDGELDC 283


>U23484-8|AAC46765.1| 1200|Caenorhabditis elegans Masculinisation of
           germline protein5 protein.
          Length = 1200

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = +1

Query: 355 RLSARPADARGRRRSAPAEDQGD-GRRETAHRKPQGS*LRSADQRHPRYRRHRV*KGGXK 531
           R  +R  D   RRRS   ED+ D  RR+    + +G   R  D R  R RR R   GG +
Sbjct: 168 RRRSRSGDRDRRRRSRSREDRRDRDRRDRDRDRDRGRGDRRGDDRQ-RDRRDRRDDGGAR 226


>AL032637-4|CAA21619.2|  534|Caenorhabditis elegans Hypothetical
           protein Y43F8C.4 protein.
          Length = 534

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +2

Query: 290 APDPCPPRPKNDVEVPPAVSSLGYLLDQQMHEGGDAP 400
           AP P P  P N     P  S L +LLD  + +   AP
Sbjct: 21  APPPPPNLPGNSKNSRPKSSGLDFLLDSDLDKEPQAP 57


>AF286899-1|AAG01332.1| 1200|Caenorhabditis elegans sex determining
           protein MOG-5 protein.
          Length = 1200

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = +1

Query: 355 RLSARPADARGRRRSAPAEDQGD-GRRETAHRKPQGS*LRSADQRHPRYRRHRV*KGGXK 531
           R  +R  D   RRRS   ED+ D  RR+    + +G   R  D R  R RR R   GG +
Sbjct: 168 RRRSRSGDRDRRRRSRSREDRRDRDRRDRDRDRDRGRGDRRGDDRQ-RDRRDRRDDGGAR 226


>AF016672-8|AAB66117.4|  998|Caenorhabditis elegans Jnk interacting
           protein (scaffoldprotein) protein 1 protein.
          Length = 998

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +2

Query: 287 TAPDPCPPRPKNDVEVPPAVSSLGYLLDQQMH 382
           +AP P PPRP + V   PA       + Q MH
Sbjct: 279 SAPSPSPPRPLSPVFGQPAPPQYRMHVSQSMH 310


>L23646-1|AAA28041.1|  244|Caenorhabditis elegans Hypothetical
           protein F44E2.3 protein.
          Length = 244

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 20/71 (28%), Positives = 33/71 (46%)
 Frame = +2

Query: 230 QINRLELSEWLRRTQRRSRTAPDPCPPRPKNDVEVPPAVSSLGYLLDQQMHEGGDAPLLQ 409
           Q+  +   E  RR +  S   P P PP P +    PP  +S+ + +   ++E     L +
Sbjct: 58  QLGSIFREERRRRERNESPKLPPPPPPPPSD----PPVDTSIPFDV-STLNEPTKKWLEE 112

Query: 410 RIKEMVGGRLH 442
           +I E V  R+H
Sbjct: 113 KIVEQVSARVH 123


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,487,588
Number of Sequences: 27780
Number of extensions: 337500
Number of successful extensions: 1249
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1245
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)