Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2272
         (620 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein S17|S...   122   4e-29
SPBC839.05c |rps1701|rps17-1|40S ribosomal protein S17|Schizosac...   121   1e-28
SPAC1039.04 |||nicotinic acid plasma membrane transporter |Schiz...    30   0.23 
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S...    27   2.9  
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    27   2.9  
SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    25   6.7  
SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   8.8  
SPCC338.13 |cog4||Golgi transport complex subunit Cog4 |Schizosa...    25   8.8  

>SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein
           S17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 132

 Score =  122 bits (294), Expect = 4e-29
 Identities = 58/80 (72%), Positives = 66/80 (82%)
 Frame = +2

Query: 236 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 415
           IEKYY RLTLDF TNKRI +E+AII +K LRNKIAG+ THLM+R++   VRGIS KLQEE
Sbjct: 17  IEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRIQRGPVRGISFKLQEE 76

Query: 416 ERERRDNYVPEVSALEHDII 475
           ERER+D YVPEVS LE D I
Sbjct: 77  ERERKDQYVPEVSELEKDKI 96



 Score = 26.2 bits (55), Expect = 3.8
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +1

Query: 478 IDPDTKDMLKMLDFNNI 528
           +D DTKDMLK L +++I
Sbjct: 98  VDQDTKDMLKALGYDSI 114


>SPBC839.05c |rps1701|rps17-1|40S ribosomal protein
           S17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 131

 Score =  121 bits (291), Expect = 1e-28
 Identities = 57/78 (73%), Positives = 65/78 (83%)
 Frame = +2

Query: 236 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 415
           IEKYY RLTLDF TNKRI +E+AII +K LRNKIAG+ THLM+R++   VRGIS KLQEE
Sbjct: 17  IEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRIQRGPVRGISFKLQEE 76

Query: 416 ERERRDNYVPEVSALEHD 469
           ERER+D YVPEVS LE D
Sbjct: 77  ERERKDQYVPEVSELEVD 94



 Score = 27.1 bits (57), Expect = 2.2
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +1

Query: 478 IDPDTKDMLKMLDFNNINGLQLTQPATQ 561
           +D DTKDMLK L ++ I  +++  PA Q
Sbjct: 98  VDQDTKDMLKSLGYDQI-PVRVLAPAPQ 124


>SPAC1039.04 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 30.3 bits (65), Expect = 0.23
 Identities = 16/67 (23%), Positives = 36/67 (53%)
 Frame = -3

Query: 324 RGLVGMIAISSHILLFVSKSSVNLV*YFSIIIFAAFLTVLVRTRPMAEVVPRAEFGTRSP 145
           RG+V + AIS+ ++ F+   S++++ +  +  FA FL  +      + V+    +   +P
Sbjct: 352 RGIVLIAAISTTMIGFIVYGSIDIMNHIGVSYFACFL--MTAGAAASSVLTSTWYNNNTP 409

Query: 144 SKGRKTV 124
           ++ R+ V
Sbjct: 410 NESRRAV 416


>SPCC1827.04 |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 600

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +2

Query: 377 SQVRGISIKLQEEERERRDNYVPEV 451
           S V  ISIK QEEER+R+     E+
Sbjct: 351 SHVDSISIKAQEEERKRQAEIEKEI 375


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +2

Query: 362 RRLRHSQVRGISIKLQEEERERRDNYVPEVS 454
           R+   S+ R  S KL EEER+RR  +V +++
Sbjct: 218 RKRSRSRPRERSSKLSEEERDRRTVFVSQLA 248


>SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 528

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -3

Query: 342 PAILFLRGLVGMIAISSHILLFVSK 268
           P I  LRGLV   A   H+L F++K
Sbjct: 457 PIIAQLRGLVNESAPGKHVLTFLNK 481


>SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 386

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -2

Query: 157 HEEPVKGKEDSKKLPAVPESVLKHRK 80
           H E V   E+ KK+P  P    K+RK
Sbjct: 170 HPESVSILEEKKKIPLYPNGQPKYRK 195


>SPCC338.13 |cog4||Golgi transport complex subunit Cog4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 738

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -2

Query: 496 PWCRGLFDDVMFESRH-FWDIVVTPLTLLFLKFDRDS 389
           PW   + DDVM+ ++  F     T  +L F +F  +S
Sbjct: 428 PWMSSIVDDVMYVTKQVFQRAFFTVSSLFFTRFVNES 464


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,386,802
Number of Sequences: 5004
Number of extensions: 47352
Number of successful extensions: 150
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)