Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2272
         (620 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0066 - 537729-538163                                            119   2e-27
10_07_0174 + 13815478-13815903                                        119   2e-27
06_01_0889 - 6807449-6809257                                           28   6.9  
01_01_0425 + 3221303-3222602,3222710-3222928,3223010-3223114,322...    27   9.1  

>03_01_0066 - 537729-538163
          Length = 144

 Score =  119 bits (287), Expect = 2e-27
 Identities = 54/80 (67%), Positives = 70/80 (87%)
 Frame = +2

Query: 236 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 415
           IEKYY+R+TLDF TNK++ EE++I+P+K LRNK+AGF+THLMRR++   VRGIS+KLQEE
Sbjct: 17  IEKYYSRMTLDFHTNKKVLEEVSILPSKRLRNKVAGFSTHLMRRIQRGPVRGISLKLQEE 76

Query: 416 ERERRDNYVPEVSALEHDII 475
           ERERR ++VP+ SALE D I
Sbjct: 77  ERERRMDFVPDRSALEVDDI 96


>10_07_0174 + 13815478-13815903
          Length = 141

 Score =  119 bits (286), Expect = 2e-27
 Identities = 53/76 (69%), Positives = 67/76 (88%)
 Frame = +2

Query: 236 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 415
           IEKYY+R+TLDF TNK++ EE++I+P+K LRNK+AGF THLMRR++   VRGIS+KLQEE
Sbjct: 17  IEKYYSRMTLDFHTNKKVLEEVSILPSKRLRNKVAGFTTHLMRRIQRGPVRGISLKLQEE 76

Query: 416 ERERRDNYVPEVSALE 463
           ERERR ++VPE SALE
Sbjct: 77  ERERRMDFVPEKSALE 92


>06_01_0889 - 6807449-6809257
          Length = 602

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +2

Query: 368 LRHSQVRGI-SIKLQEEERERRDNYVPEVSALEHDIIE 478
           LRH Q R I ++ +    R R + YVP+     HD+ E
Sbjct: 487 LRHPQAREIYAMAVDMVSRIRAEGYVPDTGEALHDVAE 524


>01_01_0425 +
           3221303-3222602,3222710-3222928,3223010-3223114,
           3223274-3223403,3223524-3224464,3224971-3225257
          Length = 993

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -1

Query: 572 P*PPWVAGCVSCRPLILLKSSIF 504
           P PPW+  C S   L+L   S +
Sbjct: 387 PIPPWIRNCTSLESLVLFNCSFY 409


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,382,229
Number of Sequences: 37544
Number of extensions: 303489
Number of successful extensions: 820
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 820
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)