Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2272
         (620 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000263-14|AAG00017.2|  130|Caenorhabditis elegans Ribosomal pr...   125   3e-29
AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal pro...    33   0.16 
AC006605-8|AAK85439.2|  741|Caenorhabditis elegans Ligase protei...    31   0.66 
Z30423-1|CAA83003.1| 1681|Caenorhabditis elegans Hypothetical pr...    29   3.5  
AC006648-9|AAF39858.2|  306|Caenorhabditis elegans Btb and math ...    29   3.5  
AF225921-1|AAF36687.1|  335|Caenorhabditis elegans secretory car...    28   4.7  
AF003739-8|AAK84628.1|  335|Caenorhabditis elegans Scamp (synapt...    28   4.7  
U00052-7|AAK21422.2|  232|Caenorhabditis elegans Fatty acid/reti...    28   6.2  

>AF000263-14|AAG00017.2|  130|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 17 protein.
          Length = 130

 Score =  125 bits (301), Expect = 3e-29
 Identities = 55/76 (72%), Positives = 66/76 (86%)
 Frame = +2

Query: 236 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 415
           IEKYYTR+T DF  NKR+C+E+AII +KPLRNKIAG+ THLMRR+    VRGISIKLQEE
Sbjct: 17  IEKYYTRMTNDFHNNKRVCDEVAIIGSKPLRNKIAGYITHLMRRIERGPVRGISIKLQEE 76

Query: 416 ERERRDNYVPEVSALE 463
           ERERRDNY+PE+S ++
Sbjct: 77  ERERRDNYMPEISTVD 92


>AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7 protein.
          Length = 244

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 14/24 (58%), Positives = 19/24 (79%)
 Frame = -2

Query: 127 SKKLPAVPESVLKHRKRREALRTR 56
           +KK+P VPE+VLK RK+R   RT+
Sbjct: 4   TKKVPQVPETVLKRRKQRADARTK 27


>AC006605-8|AAK85439.2|  741|Caenorhabditis elegans Ligase protein 4
           protein.
          Length = 741

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
 Frame = +3

Query: 318 SLLGIKLLDLPHI**GVSDT--RKCEESLSNFRKRSVRGVTTMSQKCLLSNMTSSN 479
           SL GI++  L     G S+T  RKCEE L +F    V+G+T  ++ C+ +   S++
Sbjct: 641 SLTGIEVAVLQ----GTSETIRRKCEEILKHFDATVVKGITPSTKLCIATAPKSTH 692


>Z30423-1|CAA83003.1| 1681|Caenorhabditis elegans Hypothetical protein
            T20G5.1 protein.
          Length = 1681

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +1

Query: 538  QLTQPATQGGYGGRP 582
            Q+T P T GGYGG+P
Sbjct: 1651 QMTYPGTTGGYGGQP 1665


>AC006648-9|AAF39858.2|  306|Caenorhabditis elegans Btb and math
           domain containingprotein 3 protein.
          Length = 306

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = +3

Query: 336 LLDLPHI**GVSDTRKCEESLSNFRKRSVRGVTTMSQKCLLSNMTSS 476
           +L L H+      TRKCEE L +F ++ ++    +++K  L N+  S
Sbjct: 222 ILHLAHMYDMPFPTRKCEEFLIDFSEKPIKEKLKVAKKYQLENLKKS 268


>AF225921-1|AAF36687.1|  335|Caenorhabditis elegans secretory
           carrier membrane protein protein.
          Length = 335

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +2

Query: 314 TKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEERERR 430
           T  L NK AG    L R+ +  + R   ++++EEE +RR
Sbjct: 57  TGSLGNKSAGMDDELFRKQQDLERRAQELRMREEELDRR 95


>AF003739-8|AAK84628.1|  335|Caenorhabditis elegans Scamp (synaptic
           vesicle protein)homolog protein 1 protein.
          Length = 335

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +2

Query: 314 TKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEERERR 430
           T  L NK AG    L R+ +  + R   ++++EEE +RR
Sbjct: 57  TGSLGNKSAGMDDELFRKQQDLERRAQELRMREEELDRR 95


>U00052-7|AAK21422.2|  232|Caenorhabditis elegans Fatty acid/retinol
           binding proteinprotein 8 protein.
          Length = 232

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +1

Query: 340 WICHTFNEASQTLASARNLYQTSGRGA 420
           W CH FN A   ++ A+ L Q     A
Sbjct: 150 WACHIFNNAKSAVSGAKALLQDDSEAA 176


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,071,829
Number of Sequences: 27780
Number of extensions: 262303
Number of successful extensions: 752
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)