Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2268
(750 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1635.01 |||voltage-dependent anion-selective channel|Schizos... 96 5e-21
SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr 3|||Ma... 28 1.6
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 27 2.2
SPAC17G8.08c |||human TMEM165 homolog|Schizosaccharomyces pombe|... 27 3.8
SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|c... 26 5.0
SPBC16A3.04 |rsm25||mitochondrial ribosomal protein subunit Rsm2... 26 5.0
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ... 26 5.0
SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces ... 26 6.6
>SPAC1635.01 |||voltage-dependent anion-selective
channel|Schizosaccharomyces pombe|chr 1|||Manual
Length = 282
Score = 95.9 bits (228), Expect = 5e-21
Identities = 57/206 (27%), Positives = 99/206 (48%), Gaps = 2/206 (0%)
Frame = +2
Query: 74 MAPPYYADLGKKANDVFSKGYHFGVFKLDLKTKSESGVEFTSGITSNQES-GKVFGSLSS 250
MAPP YA + K ND+ + + G L ++T + +GV F ++ NQ++ G + G L +
Sbjct: 1 MAPPAYAAINKLCNDLLQRDFPVGATLLSVRTTAPNGVVFN--VSGNQDAKGVISGKLET 58
Query: 251 KFAVKDYGLTFTEKWNTDNTLATDITIQDKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTN 430
F K GLT ++ W T N L + + + ++ A GL + + TF+P T KT L +
Sbjct: 59 SFNDKANGLTISQGWTTANVLESKVGLSEQFAPGLHLNVNTTFSPATAAKTAILNLEHQH 118
Query: 431 DTVAVNTNLDLDLAGPVVDVAAVLNYQGWLAGVHTQFDTQKAKFSKNNFALGYQSGDFAL 610
+ + +++ + D + ++G+LAG +D QK S +GY + ++
Sbjct: 119 PLIHTHASVNALERKFLGDF--TVGHEGFLAGAEFGYDVQKGNVSNYAATIGYLASPLSV 176
Query: 611 HTNVDNGKD-FGGSIYQXVSDKLDCG 685
N F S Y VS ++ G
Sbjct: 177 ALQASNNLSVFRASYYHRVSSDVEAG 202
>SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 628
Score = 27.9 bits (59), Expect = 1.6
Identities = 22/112 (19%), Positives = 39/112 (34%), Gaps = 2/112 (1%)
Frame = +2
Query: 161 LKTKSESGVEFTSGITSNQESGKVFGSLSSKFAVKDYGLTFTEKWNTDNTLATDITIQDK 340
L ++ + SG + + V + + + G ++DN I +
Sbjct: 173 LSIEAGRNAQVESGFSLGESFAHVGNDMQFHLPISNSGAATPRSVHSDNQSQISIEVGRD 232
Query: 341 IAAGLKVTLEGTFAPQTGTKTGKLKTSFTNDTVAV--NTNLDLDLAGPVVDV 490
A L G PQ T F+ ++ T+LD +L PV D+
Sbjct: 233 APAAAATDLSGIIGPQMTKSPASSVTHFSTPSMLPIGGTSLDDELLAPVDDL 284
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 27.5 bits (58), Expect = 2.2
Identities = 10/35 (28%), Positives = 22/35 (62%)
Frame = +2
Query: 359 VTLEGTFAPQTGTKTGKLKTSFTNDTVAVNTNLDL 463
V++E P+ T +G+++T+F DT+ + L++
Sbjct: 3557 VSIEPLLKPEFFTGSGEVQTTFAKDTITITLPLNI 3591
>SPAC17G8.08c |||human TMEM165 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 287
Score = 26.6 bits (56), Expect = 3.8
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +2
Query: 170 KSESGVEFTSGITSNQESGKVFGSLSSKFAVKDYGLTFTEKWNTDNTLAT 319
+S SG S + S + V +L S +K + LTF +W + +AT
Sbjct: 176 RSRSGHTLMSQLKSKGRN--VMATLFSPLFIKAFALTFVSEWGDRSQIAT 223
>SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 433
Score = 26.2 bits (55), Expect = 5.0
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = -3
Query: 217 LVGGDSAGEFNTRLALGLQVEFENTKVIALAEDIIG 110
L GG G+F++ L G++ ++ T+ AE +IG
Sbjct: 72 LAGGRGKGQFDSGLRGGVRPVYDATEARMFAEQMIG 107
>SPBC16A3.04 |rsm25||mitochondrial ribosomal protein subunit
Rsm25|Schizosaccharomyces pombe|chr 2|||Manual
Length = 220
Score = 26.2 bits (55), Expect = 5.0
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +2
Query: 530 HTQFDTQKAKFSKNNFALGYQSGDFALHTNVDNGKDF 640
H Q A F+K++ LGY+ AL++ DN +
Sbjct: 164 HDQAQALGAVFTKSDLELGYEMDQNALNSWFDNASQY 200
>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 377
Score = 26.2 bits (55), Expect = 5.0
Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 6/85 (7%)
Frame = +2
Query: 11 APICVEFSVK*YQFVNL*NTDMAPPY------YADLGKKANDVFSKGYHFGVFKLDLKTK 172
APIC EF+ Y F L T + YA G N S YH G D+ +
Sbjct: 288 APICFEFAK--YGFCEL-GTSCKNQHILQCTDYAMFGSCNNPQCSL-YH-GAVSADVPEQ 342
Query: 173 SESGVEFTSGITSNQESGKVFGSLS 247
+E+ + T+G + ++SG GS S
Sbjct: 343 TEAPISKTAGSINPEDSGSEIGSNS 367
>SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 25.8 bits (54), Expect = 6.6
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Frame = +3
Query: 168 PRASLVLNSP---AESPPTRKAERFLAAFPPNLQ 260
P L + P + P T+KA +FPPNLQ
Sbjct: 378 PNTKLSITIPEAGSTDPETQKARAAFESFPPNLQ 411
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,930,127
Number of Sequences: 5004
Number of extensions: 59295
Number of successful extensions: 142
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -