Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2263
(534 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm... 29 0.44
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces... 29 0.58
SPAC31G5.10 |eta2||Myb family transcriptional regulator Eta2|Sch... 28 0.76
SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|... 26 3.1
SPBC4B4.01c |||fumble family pantothenate kinase |Schizosaccharo... 26 4.1
SPBC19G7.16 |iws1||transcription elongation factor complex subun... 25 7.1
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po... 25 7.1
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom... 25 7.1
SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter ... 25 7.1
SPBC409.12c |||nuclear telomere cap complex subunit Stn1|Schizos... 25 9.4
>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
intermediate chain Dic1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 544
Score = 29.1 bits (62), Expect = 0.44
Identities = 14/50 (28%), Positives = 22/50 (44%)
Frame = -3
Query: 436 PSPKTETMQYIVLFSQRTVHEPSVVLSQ*QEELVCSPAPFFCSIVQVTTY 287
P T ++++QR + P VL E VC P+PF ++ Y
Sbjct: 215 PKEALRTRGLAIVWNQRWKNSPESVLKARSEITVCKPSPFHPQLIAGGAY 264
>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 745
Score = 28.7 bits (61), Expect = 0.58
Identities = 18/64 (28%), Positives = 30/64 (46%)
Frame = +3
Query: 90 IMEVKECNDLDEENQFIVDDVSKIIKEAIENSIGGTAYQHNNVNQWTSAVVESCLGQLTK 269
++E E +D DE N + + S + K+ +EN+ Y H+ + V +S TK
Sbjct: 485 LVETSELSDSDE-NSVLSNKSSTLSKKVVENT-SPLKYTHSASKSFIGEVQDSLQALKTK 542
Query: 270 LQKP 281
KP
Sbjct: 543 AHKP 546
>SPAC31G5.10 |eta2||Myb family transcriptional regulator
Eta2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 28.3 bits (60), Expect = 0.76
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +3
Query: 87 KIMEVKECNDLDEENQFIVDDVSKIIKEAIENSIGGTA 200
K M+ K+ + DE+N+F + S I K + +S+GGT+
Sbjct: 59 KSMKRKDVYEFDEDNEFEFEMGSLIHKPSRAHSLGGTS 96
>SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 540
Score = 26.2 bits (55), Expect = 3.1
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = -1
Query: 417 QCST*FYSPNGPCTSH 370
+C T F P GPCT H
Sbjct: 301 RCGTRFADPRGPCTYH 316
>SPBC4B4.01c |||fumble family pantothenate kinase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 25.8 bits (54), Expect = 4.1
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 132 QFIVDDVSKIIKEAIENSIGGTAYQH 209
+F D+S+ + AI N+IG AY H
Sbjct: 306 EFAPQDISRSLLLAISNNIGQIAYLH 331
>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 25.0 bits (52), Expect = 7.1
Identities = 16/28 (57%), Positives = 19/28 (67%)
Frame = +3
Query: 105 ECNDLDEENQFIVDDVSKIIKEAIENSI 188
E +DLDE NQF D SKI +EA E +I
Sbjct: 57 ELSDLDE-NQFENFDESKIGREAEEPTI 83
>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1564
Score = 25.0 bits (52), Expect = 7.1
Identities = 11/48 (22%), Positives = 24/48 (50%)
Frame = +3
Query: 93 MEVKECNDLDEENQFIVDDVSKIIKEAIENSIGGTAYQHNNVNQWTSA 236
+ + + N + + I+D + +K+ ++++ TAY N N T A
Sbjct: 1083 LHMSKLNKSNSSKKIIIDPLKDSMKDLVQHAFTITAYDSNIHNALTRA 1130
>SPBC3F6.05 |rga1||GTPase activating protein
Rga1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1150
Score = 25.0 bits (52), Expect = 7.1
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = +3
Query: 120 DEENQFIVDDVSKIIKEAIENSIGGTAYQH 209
DE F +DD+ K+I E A++H
Sbjct: 700 DENRAFTLDDIPKVISEQRNREHRPNAFRH 729
>SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter
Str2 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 597
Score = 25.0 bits (52), Expect = 7.1
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -2
Query: 344 RTCMQSCTILLQYCAGHYIFVWFL 273
RT + SC ++ Y +YIF FL
Sbjct: 350 RTILGSCVLIFTYFMSYYIFSNFL 373
>SPBC409.12c |||nuclear telomere cap complex subunit
Stn1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 325
Score = 24.6 bits (51), Expect = 9.4
Identities = 13/50 (26%), Positives = 22/50 (44%)
Frame = +3
Query: 90 IMEVKECNDLDEENQFIVDDVSKIIKEAIENSIGGTAYQHNNVNQWTSAV 239
++ V +C+ + FI+ D + K AI S G +N + S V
Sbjct: 67 VLTVDDCSGMVLRVVFIIQDDFSMSKRAISMSPGNVVCVFGKINSFRSEV 116
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,176,800
Number of Sequences: 5004
Number of extensions: 42652
Number of successful extensions: 139
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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