Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2263
         (534 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0486 - 18634813-18635168,18635258-18638726                       30   1.3  
06_01_0587 - 4211917-4212021,4212250-4212478,4213426-4213759,421...    29   1.8  
03_05_0124 + 21034963-21035181,21035618-21037466,21037485-210381...    29   2.4  
01_01_0703 - 5425713-5425862,5426302-5426451,5426853-5426964,542...    29   2.4  
03_06_0741 + 35893538-35895600,35896274-35896474,35896701-358968...    27   7.2  

>07_03_0486 - 18634813-18635168,18635258-18638726
          Length = 1274

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 16/31 (51%), Positives = 19/31 (61%)
 Frame = +1

Query: 340 VLLVIGITLLMARARSVGRIKLCTALSQSLG 432
           VLLVI + L+  R R  G +  CTA S SLG
Sbjct: 899 VLLVIVLVLIAVRRRRSGEVN-CTAFSSSLG 928


>06_01_0587 -
           4211917-4212021,4212250-4212478,4213426-4213759,
           4215116-4215186,4215374-4215493,4216353-4216771,
           4216885-4217336,4217434-4217812
          Length = 702

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +2

Query: 188 WRHCLSTQQCQPMDF 232
           W+HC++  QCQ +DF
Sbjct: 455 WQHCIAVAQCQALDF 469


>03_05_0124 +
           21034963-21035181,21035618-21037466,21037485-21038194,
           21038426-21038470,21038557-21038745
          Length = 1003

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 29/104 (27%), Positives = 47/104 (45%)
 Frame = +3

Query: 24  LRNSNRNFILITFHTYFLT*NKIMEVKECNDLDEENQFIVDDVSKIIKEAIENSIGGTAY 203
           L +S R   L+ + + F T  +I ++ E +  D  N  I+D  +  ++E  +        
Sbjct: 583 LPDSIRGLKLLRYLSIFQT--RISKLPE-SICDLLNLKILDARTNFLEELPQGIQKLVKL 639

Query: 204 QHNNVNQWTSAVVESCLGQLTKLQKPYKYVVTCTILQKNGAGLH 335
           QH N+  W+   +   +G LTKLQ   +Y V       N A LH
Sbjct: 640 QHLNLVLWSPLCMPKGIGNLTKLQTLTRYSVGSGNWHCNIAELH 683


>01_01_0703 -
           5425713-5425862,5426302-5426451,5426853-5426964,
           5427120-5427481,5427578-5427712,5427812-5427889,
           5427989-5428174,5428266-5428452,5428552-5428658,
           5428732-5428806,5428885-5429040,5429165-5429437,
           5429548-5429643,5429724-5429814,5429883-5430385
          Length = 886

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -1

Query: 354 NNKKNLYAVLHHSSAVLCRSLHICMVF 274
           +N+  L AV HH SA+LC SL    VF
Sbjct: 766 SNESILKAVWHHPSAILCCSLKAMPVF 792


>03_06_0741 +
           35893538-35895600,35896274-35896474,35896701-35896814,
           35897570-35897649,35897772-35897896,35898008-35898079
          Length = 884

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = -3

Query: 325 APFFCSIVQVTTYLYGFCNLVNCPRHDSTTAE 230
           APF  S  Q+ +++    +L++CP H S+++E
Sbjct: 666 APFRASDSQLGSFISSRDDLLSCPNHSSSSSE 697


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,176,135
Number of Sequences: 37544
Number of extensions: 256024
Number of successful extensions: 658
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)