Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2262
(750 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0049 + 418957-419040,419599-419796,419918-420040,420172-42... 38 0.011
08_02_1023 - 23710825-23710950,23711037-23711120,23711367-237114... 31 0.74
05_05_0230 - 23476919-23477372,23477656-23477695,23478578-234787... 31 0.98
06_03_1320 - 29292986-29293005,29293222-29293282,29293530-292938... 30 2.3
05_01_0203 + 1459600-1460010 30 2.3
09_06_0147 + 21195222-21195377,21195471-21195522,21196842-212043... 29 3.9
01_06_0090 + 26358051-26359157,26359582-26359701,26359968-263600... 29 3.9
12_02_1035 - 25570009-25571241,25571940-25573709,25573797-255751... 29 5.2
04_04_1478 - 33882625-33883639,33883725-33883849,33883935-338841... 29 5.2
04_04_1441 - 33621423-33622118,33622251-33622315,33623140-336232... 29 5.2
10_08_0290 + 16549048-16549262,16549770-16549833,16550106-165502... 28 6.9
03_05_0803 + 27829438-27829461,27829558-27829643,27829960-278300... 28 6.9
03_02_0254 + 6862762-6863663,6863994-6864241,6864323-6864465,686... 28 6.9
12_01_0490 + 3878436-3878466,3878559-3879113,3879218-3879777,388... 28 9.1
10_08_0533 + 18592177-18592581,18592674-18593906 28 9.1
09_03_0022 + 11610691-11610760,11611153-11611564,11613581-11614109 28 9.1
01_01_0391 + 3015864-3016179,3016933-3017756,3017841-3018107,301... 28 9.1
>03_01_0049 + 418957-419040,419599-419796,419918-420040,420172-420209,
420334-420502,421115-424273,424367-424485,424915-425116
Length = 1363
Score = 37.5 bits (83), Expect = 0.011
Identities = 21/82 (25%), Positives = 42/82 (51%)
Frame = +1
Query: 193 ALVTSLTDRVPLVGGAMASTMQLEFTQAMNDFKTMFPDMDDDVIEAVLRANQGAVDATID 372
+L+ +L D+V M T +LEF Q + + + DD VLR + + +T++
Sbjct: 813 SLIVNLKDKVERQQAEM-ETQRLEFKQKQQEAQRKLSEAQDD--SEVLRRSNSKLQSTVE 869
Query: 373 QLLAMSTDNQNELLRLEMERVE 438
L+ + QN++ L+ +++E
Sbjct: 870 SLIEECSSLQNQIAELKRQKLE 891
>08_02_1023 -
23710825-23710950,23711037-23711120,23711367-23711492,
23711593-23711712,23712046-23712153,23712243-23712395,
23712505-23712600,23712716-23712800,23713278-23714268,
23714870-23714915,23715806-23715964,23716516-23716651,
23716734-23716900,23717366-23717696,23717827-23718062,
23718326-23718514
Length = 1050
Score = 31.5 bits (68), Expect = 0.74
Identities = 22/76 (28%), Positives = 34/76 (44%)
Frame = +1
Query: 316 DVIEAVLRANQGAVDATIDQLLAMSTDNQNELLRLEMERVESNTPSKRKDRRNTRPADEC 495
DV + N+G + +A +T N L+ RV +TP +K T PADE
Sbjct: 639 DVNKLQKMRNKGNKKNEVASNVAKNTSKANTKKNLKKNRVWDDTPDDKKKLDFTDPADER 698
Query: 496 DDDDTAALVNVEDESV 543
D+ +V + ES+
Sbjct: 699 GDEVIDQVVVKQGESM 714
>05_05_0230 -
23476919-23477372,23477656-23477695,23478578-23478700,
23479114-23479151,23479289-23479674,23479875-23481053,
23481805-23481928,23482733-23482779
Length = 796
Score = 31.1 bits (67), Expect = 0.98
Identities = 32/95 (33%), Positives = 44/95 (46%)
Frame = -2
Query: 359 STAPWFARRTASMTSSSISGNIVLKSFIA*VNSSCIVDAIAPPTSGTRSVRDVTSASPLP 180
STAP R+ S+T SI ++ S V ++ I + PT+ +R R T +P
Sbjct: 68 STAPTRPARSNSVTRPSIQSTLMSSSNRTAVLNTSISSVSSRPTTPSR--RSSTVVAP-- 123
Query: 179 VAQLIYDAGLPQCLRGSTPCRHWPSSRHTTRL*TP 75
Q I A P R STP + PS+ TR TP
Sbjct: 124 -KQSIA-ASRPVPARSSTPVKTRPSTPTKTRPSTP 156
>06_03_1320 -
29292986-29293005,29293222-29293282,29293530-29293804,
29293881-29293974
Length = 149
Score = 29.9 bits (64), Expect = 2.3
Identities = 11/35 (31%), Positives = 24/35 (68%)
Frame = +1
Query: 295 MFPDMDDDVIEAVLRANQGAVDATIDQLLAMSTDN 399
MFP++ ++ I+ +L+AN+ + T+D L +++ N
Sbjct: 66 MFPNISEEFIDELLQANEFDICLTVDMLHELNSQN 100
>05_01_0203 + 1459600-1460010
Length = 136
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/22 (59%), Positives = 14/22 (63%), Gaps = 3/22 (13%)
Frame = +1
Query: 91 VVCLEDGQCR---HGVDPLRHC 147
+V EDG CR H V PLRHC
Sbjct: 89 LVSAEDGSCRCKAHSVQPLRHC 110
>09_06_0147 + 21195222-21195377,21195471-21195522,21196842-21204362,
21204453-21205031,21205176-21205484,21205638-21205718,
21205971-21206279,21207430-21207816,21207964-21208767,
21208856-21209218,21209437-21209667,21209934-21210278,
21210494-21210712,21210759-21210815,21210978-21211322,
21211538-21211756,21211803-21211859,21212022-21212366,
21212584-21212814,21213100-21213458
Length = 4322
Score = 29.1 bits (62), Expect = 3.9
Identities = 20/88 (22%), Positives = 38/88 (43%)
Frame = +1
Query: 337 RANQGAVDATIDQLLAMSTDNQNELLRLEMERVESNTPSKRKDRRNTRPADECDDDDTAA 516
+A+Q +V + D + + + + E + +P K++R DE + DT
Sbjct: 4058 KADQASVQSPQDNMDQVKETEEQDTGTGETYQASVQSPQDIKEQR-----DETEQQDTRT 4112
Query: 517 LVNVEDESVPLAVRKRWIPRMLGPLPPM 600
+D P A + + +PR P PP+
Sbjct: 4113 GEAYQDAPAPDAPQDKGLPRSTQPPPPI 4140
>01_06_0090 +
26358051-26359157,26359582-26359701,26359968-26360099,
26360194-26360375,26360488-26360602,26362001-26362135,
26362261-26362395
Length = 641
Score = 29.1 bits (62), Expect = 3.9
Identities = 21/87 (24%), Positives = 38/87 (43%)
Frame = +1
Query: 361 ATIDQLLAMSTDNQNELLRLEMERVESNTPSKRKDRRNTRPADECDDDDTAALVNVEDES 540
A +D + T + ++ +E E E K++ AD+C TA++ + + ES
Sbjct: 135 AELDAAVLEVTSRKQRIVHMEKEMAEL----KKQQEAAAADADDCSS--TASVSHEQPES 188
Query: 541 VPLAVRKRWIPRMLGPLPPMFLRIPPA 621
A + + P+PP +PPA
Sbjct: 189 ASSAANPASLVQRGPPIPPPPPPVPPA 215
>12_02_1035 - 25570009-25571241,25571940-25573709,25573797-25575118,
25575208-25575555,25576540-25576633
Length = 1588
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/63 (22%), Positives = 30/63 (47%)
Frame = +1
Query: 394 DNQNELLRLEMERVESNTPSKRKDRRNTRPADECDDDDTAALVNVEDESVPLAVRKRWIP 573
+ NELLR ++ +++S + R + CD + T L N++ + A+ K +
Sbjct: 1030 EKSNELLREKLHKLQSEVQALRSKEQPVIDVKSCDAEITKLLTNMQMATANAALFKEKVL 1089
Query: 574 RML 582
++
Sbjct: 1090 ELI 1092
>04_04_1478 -
33882625-33883639,33883725-33883849,33883935-33884144,
33884645-33884650
Length = 451
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
Frame = +1
Query: 547 LAVRKRWIPRMLGP-----LPPMFLRIPPATDARIDLS 645
L + W+ GP LPP F +PP+ D +ID+S
Sbjct: 23 LQAKGSWLLHAAGPSSDDSLPPGFESLPPSNDLKIDMS 60
>04_04_1441 -
33621423-33622118,33622251-33622315,33623140-33623227,
33623957-33625570
Length = 820
Score = 28.7 bits (61), Expect = 5.2
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Frame = +1
Query: 451 SKRKDRRNTRPADECDDDDTAALVNVED--ESVPLAVRKRWIPRMLGPLPPMFLRIPPAT 624
+K DR + D+ + T + E + V +++ + + PLPP LR+PP+
Sbjct: 444 AKSADRLSVSDGDDVSSEGTIISQDGEKSGKKVRFSMKNNLVWKPHNPLPPQCLRLPPSA 503
Query: 625 DAR 633
R
Sbjct: 504 TPR 506
>10_08_0290 +
16549048-16549262,16549770-16549833,16550106-16550267,
16550786-16550956,16551041-16551235,16551421-16551546,
16551648-16551809,16551953-16552120,16552223-16552435
Length = 491
Score = 28.3 bits (60), Expect = 6.9
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Frame = +1
Query: 313 DDVIEAVLRANQGAVDATIDQLLAMSTDNQNELLRLEMERVESNTPSKR--KDRRNTRPA 486
+ +I+ + + TI+ + S DN + L L +V+ N P R D R PA
Sbjct: 139 EQIIDLITKIMDNGKAYTIEGDVYFSVDNFPDYLSLSGRKVDQNRPGTRVAVDARKRNPA 198
Query: 487 D 489
D
Sbjct: 199 D 199
>03_05_0803 +
27829438-27829461,27829558-27829643,27829960-27830088,
27830806-27830925,27831007-27831132,27831349-27831433,
27831538-27831648,27832215-27832308,27832448-27832728,
27832840-27832947,27833163-27833284,27833825-27834035,
27834149-27834376,27834591-27834680
Length = 604
Score = 28.3 bits (60), Expect = 6.9
Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 7/94 (7%)
Frame = +1
Query: 304 DMDDDVIEAVLRANQGAVDATIDQLLAMSTDNQNELLRLEME------RVESNTPSKRKD 465
DM++ ++EA++ ++ A + L M ++ LR+E E R N P D
Sbjct: 475 DMENSLVEAIIDRSESNEIADKKRKLEMLEKQYHDELRMEYEGKTFSNRTADNQPDV-VD 533
Query: 466 RRNTRPADE-CDDDDTAALVNVEDESVPLAVRKR 564
+ +T+ AD+ +D A + D S L RK+
Sbjct: 534 KSDTKEADDHMEDSHKQAEKDAADISKTLMSRKQ 567
>03_02_0254 +
6862762-6863663,6863994-6864241,6864323-6864465,
6864532-6864570,6865403-6865501
Length = 476
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +1
Query: 427 ERVESNTPSKRKDRRNTRPADECDDDDTAALVNVEDES 540
ER E+ + K +DRR +PA E +D D A+ VE+ S
Sbjct: 128 ERDEAGSEVKGEDRRRRQPAAEEEDGDEAS-SGVEERS 164
>12_01_0490 +
3878436-3878466,3878559-3879113,3879218-3879777,
3880660-3880965,3881071-3881202,3881623-3881756,
3881939-3882015,3882084-3882226,3883376-3883633,
3884085-3884111
Length = 740
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +1
Query: 454 KRKDRRNTRPADECDDDDTAALVNVEDES 540
KRK NT AD DD D+A D++
Sbjct: 18 KRKRNANTSAADHSDDSDSAVAAAANDDN 46
>10_08_0533 + 18592177-18592581,18592674-18593906
Length = 545
Score = 27.9 bits (59), Expect = 9.1
Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 6/85 (7%)
Frame = +1
Query: 409 LLRLEMERVESNTPSKRKDRRNTRPADECDDDDTAALVNVEDESVPLAVRKRWIPRMLGP 588
L RL + ES +PS D DD++TA+ + + +A +R P P
Sbjct: 17 LRRLSVAVEESVSPSPPPPPPRQPQEDSVDDEETASPSPGKPQEGSVAAEERASP---SP 73
Query: 589 LPP------MFLRIPPATDARIDLS 645
PP +F R+ A D R+ LS
Sbjct: 74 PPPRRKKDSLFRRVAAAADPRLPLS 98
>09_03_0022 + 11610691-11610760,11611153-11611564,11613581-11614109
Length = 336
Score = 27.9 bits (59), Expect = 9.1
Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 4/93 (4%)
Frame = +1
Query: 232 GGAMASTMQLEFTQAMNDFKTMFPDMDDDVI--EAVLRA--NQGAVDATIDQLLAMSTDN 399
G +ST+Q + +N +KT+FPD D + EA+ A NQ V ++ N
Sbjct: 79 GKNSSSTLQFDLHLGVNYWKTVFPDFPDAYVVHEALFVAWGNQAPV-CLVNTGQGTPFVN 137
Query: 400 QNELLRLEMERVESNTPSKRKDRRNTRPADECD 498
+ EL LE + K NT P+D D
Sbjct: 138 RVELRPLEDALYPDHV--KANQSMNTYPSDPYD 168
>01_01_0391 +
3015864-3016179,3016933-3017756,3017841-3018107,
3018505-3018762,3018950-3018997
Length = 570
Score = 27.9 bits (59), Expect = 9.1
Identities = 33/111 (29%), Positives = 52/111 (46%), Gaps = 5/111 (4%)
Frame = +1
Query: 334 LRANQGAVD-ATIDQLLAMSTDNQNELLRLEMERVESNTPSKRKDRRNTRPAD--ECDDD 504
L++ +VD A +D + + + LE+ N P + + N R D E DDD
Sbjct: 244 LKSGMSSVDVAEVDAWIRYGMQHVSNTFTLEL-----NIPLRSGNNSNHRYLDDDEDDDD 298
Query: 505 DTAALVNVEDESVPLAVRKRWIPRMLGPLPPMFLRIPPAT--DARIDLSLE 651
D ++ E +P + R + + ML L LR+P A D+ +DLSLE
Sbjct: 299 DNNGMILAE---LPSSPRLKSV--MLS-LSNARLRLPTAAAFDSLVDLSLE 343
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,151,414
Number of Sequences: 37544
Number of extensions: 435887
Number of successful extensions: 1341
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1338
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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