Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2259
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomy...    26   6.6  
SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces po...    26   6.6  
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi...    25   8.7  
SPAC7D4.06c |alg3||dolichol-P-Man dependent alpha|Schizosaccharo...    25   8.7  

>SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 656

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 639 SNSCLKLLDIILFTIKYFVYVNFTHITLF 553
           +N  L+ LDI +FTI  F     T++T F
Sbjct: 628 NNWILRTLDIFMFTIGAFAMAFTTYMTFF 656


>SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -2

Query: 224 HLQKHRNFIHKRQRISPFDERKIHEQPSQ 138
           H+    N++ KR+      E ++HE+PSQ
Sbjct: 57  HIASDENWMEKRKARFKKKETEVHEKPSQ 85


>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
           Air1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 313

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -3

Query: 232 SSTICRNTVILSINGNEYPHLTNGRYTSSPPN 137
           SST   ++ +  + G+E+  ++ GRY  S P+
Sbjct: 53  SSTDLSDSTLEDVEGSEWADVSRGRYFGSDPS 84


>SPAC7D4.06c |alg3||dolichol-P-Man dependent
           alpha|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 406

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = +3

Query: 57  LFVSAYLVVAPILDKPQCEYMYAAAFILGGLLVYLPFVK--WGY 182
           L+V AYLV+   +  P+  +M+    I+  +L  +PF+   W Y
Sbjct: 192 LYVPAYLVLLLQILGPKKTWMHIFVIIIVQILFSIPFLAYFWSY 235


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,594,704
Number of Sequences: 5004
Number of extensions: 53688
Number of successful extensions: 132
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)