Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2259
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0972 - 9789453-9790364,9790383-9790861,9791071-9792238           30   1.7  
09_01_0038 - 639995-640318                                             28   6.9  
07_03_1038 - 23449764-23450204                                         28   6.9  
07_01_0505 - 3759254-3759490,3759846-3759989,3760135-3760347,376...    28   9.1  
06_03_0243 + 18629793-18630047,18630362-18630442,18631911-186323...    28   9.1  

>08_01_0972 - 9789453-9790364,9790383-9790861,9791071-9792238
          Length = 852

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = -2

Query: 167 ERKIHEQPSQYKRGRIHVLALRLVQYRSHHEIRRHKQHDI 48
           E  + E    Y +  +H   L+LVQ  S   IRR K HDI
Sbjct: 398 ESTLEEVAEGYLKELVHRNMLQLVQKNSFGRIRRFKMHDI 437


>09_01_0038 - 639995-640318
          Length = 107

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +2

Query: 14  PXTLQGTNNYSVYRAVCVGVSRGGSYTGQASVRVHVCGRVYIGRA 148
           P T+  T    V+R+   G+ RG S TG+   R   C +V  GR+
Sbjct: 52  PVTMDVTE-LGVWRSTVGGLGRGRSSTGRLKRRGSACNKVRRGRS 95


>07_03_1038 - 23449764-23450204
          Length = 146

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +2

Query: 68  GVSRGGSYTGQASVRVHVCGRVYIGR-AARVSSVRQMGIFVAV 193
           GV RGG   GQ +     CG + IGR  +R +  R+ G+  A+
Sbjct: 87  GVQRGGGGLGQRAGEGGCCGSLVIGRTGSRPAEGRRSGVAEAM 129


>07_01_0505 -
           3759254-3759490,3759846-3759989,3760135-3760347,
           3760439-3760990,3761339-3761806,3761959-3762023,
           3762133-3762265,3763798-3764022
          Length = 678

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
 Frame = -3

Query: 199 SINGNEYPHLTNGRYTSS---PPNINAAAYMYSH*GLSSIGATTRY 71
           S N N YPHL   +  +S   PP+I +A+ MY + G SS G+   Y
Sbjct: 287 SRNQNTYPHLMGLQTPTSPLGPPSIYSASGMYGYNG-SSYGSGLWY 331


>06_03_0243 +
           18629793-18630047,18630362-18630442,18631911-18632305,
           18632471-18632926,18633156-18633247,18633528-18633683,
           18635657-18636057
          Length = 611

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +1

Query: 181 IRCRLWIKLRCFCKWY*R*CQH 246
           +RCRL    RCF  W  R C+H
Sbjct: 164 LRCRLHALWRCFFHWRSRCCRH 185


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,237,498
Number of Sequences: 37544
Number of extensions: 296729
Number of successful extensions: 677
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)