Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2259
         (750 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014298-2043|AAN09339.1|  541|Drosophila melanogaster CG9413-PB...    83   5e-16
AE014298-2042|AAF48379.2|  532|Drosophila melanogaster CG9413-PA...    83   5e-16
AY071659-1|AAL49281.1|  436|Drosophila melanogaster RE74364p pro...    36   0.045
AL121806-10|CAB58085.1|  692|Drosophila melanogaster EG:BACR42I1...    36   0.059
AE014298-161|AAF45593.2|  436|Drosophila melanogaster CG11381-PA...    36   0.059
AE013599-869|AAF58935.1|  254|Drosophila melanogaster CG13953-PA...    29   5.1  
EF058058-1|ABN51176.1|  658|Drosophila melanogaster NKAIN protein.     29   6.8  
AF024604-1|AAB82274.1| 1751|Drosophila melanogaster transcriptio...    29   6.8  
AF024603-1|AAB82273.1| 1773|Drosophila melanogaster transcriptio...    29   6.8  
AE013599-3974|AAN16122.1|  661|Drosophila melanogaster CG9047-PC...    29   6.8  
AE013599-3973|AAF47286.3|  661|Drosophila melanogaster CG9047-PB...    29   6.8  
AE013599-3972|AAM70797.2|  661|Drosophila melanogaster CG9047-PA...    29   6.8  
M74078-1|AAA28498.1|  878|Drosophila melanogaster ecdysone recep...    29   8.9  
BT015234-1|AAT94463.1|  878|Drosophila melanogaster RE06878p pro...    29   8.9  
BT012469-1|AAS93740.1|  878|Drosophila melanogaster RE33854p pro...    29   8.9  
AE013599-153|AAF57280.2|  878|Drosophila melanogaster CG1765-PB,...    29   8.9  

>AE014298-2043|AAN09339.1|  541|Drosophila melanogaster CG9413-PB,
           isoform B protein.
          Length = 541

 Score = 82.6 bits (195), Expect = 5e-16
 Identities = 36/65 (55%), Positives = 49/65 (75%)
 Frame = +3

Query: 57  LFVSAYLVVAPILDKPQCEYMYAAAFILGGLLVYLPFVKWGYSLPFMDKITVFLQMVLEV 236
           L +S YLV API + P+ EY+YA  FI  GL+ Y+PFVK G +  FM+K+T+F Q++LEV
Sbjct: 472 LVISVYLVAAPIFETPRVEYLYALLFIFAGLIFYVPFVKLGMTPRFMNKVTLFFQLLLEV 531

Query: 237 VPTST 251
           VPTS+
Sbjct: 532 VPTSS 536


>AE014298-2042|AAF48379.2|  532|Drosophila melanogaster CG9413-PA,
           isoform A protein.
          Length = 532

 Score = 82.6 bits (195), Expect = 5e-16
 Identities = 36/65 (55%), Positives = 49/65 (75%)
 Frame = +3

Query: 57  LFVSAYLVVAPILDKPQCEYMYAAAFILGGLLVYLPFVKWGYSLPFMDKITVFLQMVLEV 236
           L +S YLV API + P+ EY+YA  FI  GL+ Y+PFVK G +  FM+K+T+F Q++LEV
Sbjct: 463 LVISVYLVAAPIFETPRVEYLYALLFIFAGLIFYVPFVKLGMTPRFMNKVTLFFQLLLEV 522

Query: 237 VPTST 251
           VPTS+
Sbjct: 523 VPTSS 527


>AY071659-1|AAL49281.1|  436|Drosophila melanogaster RE74364p
           protein.
          Length = 436

 Score = 36.3 bits (80), Expect = 0.045
 Identities = 21/73 (28%), Positives = 34/73 (46%)
 Frame = -2

Query: 239 HYL*YHLQKHRNFIHKRQRISPFDERKIHEQPSQYKRGRIHVLALRLVQYRSHHEIRRHK 60
           HY     Q+H ++  +  + SP    ++    SQ+     +  A    Q + HHEI+ HK
Sbjct: 141 HYGLSQQQQHESYGQEHYQQSP---NQLQHHQSQHANEYAYEPA-HFQQQQQHHEIQSHK 196

Query: 59  QHDIRNNYWYLVR 21
           QH  R  +W  V+
Sbjct: 197 QHQQRKEHWNFVQ 209


>AL121806-10|CAB58085.1|  692|Drosophila melanogaster EG:BACR42I17.9
           protein.
          Length = 692

 Score = 35.9 bits (79), Expect = 0.059
 Identities = 21/73 (28%), Positives = 34/73 (46%)
 Frame = -2

Query: 239 HYL*YHLQKHRNFIHKRQRISPFDERKIHEQPSQYKRGRIHVLALRLVQYRSHHEIRRHK 60
           HY     Q+H ++  +  + SP    ++    SQ+     +  A    Q + HHEI+ HK
Sbjct: 141 HYGLSQQQQHESYGQEHYQQSP---NQLQHHQSQHANEYAYEPA-HFQQQQQHHEIQGHK 196

Query: 59  QHDIRNNYWYLVR 21
           QH  R  +W  V+
Sbjct: 197 QHQQRKEHWNFVQ 209


>AE014298-161|AAF45593.2|  436|Drosophila melanogaster CG11381-PA
           protein.
          Length = 436

 Score = 35.9 bits (79), Expect = 0.059
 Identities = 21/73 (28%), Positives = 34/73 (46%)
 Frame = -2

Query: 239 HYL*YHLQKHRNFIHKRQRISPFDERKIHEQPSQYKRGRIHVLALRLVQYRSHHEIRRHK 60
           HY     Q+H ++  +  + SP    ++    SQ+     +  A    Q + HHEI+ HK
Sbjct: 141 HYGLSQQQQHESYGQEHYQQSP---NQLQHHQSQHANEYAYEPA-HFQQQQQHHEIQGHK 196

Query: 59  QHDIRNNYWYLVR 21
           QH  R  +W  V+
Sbjct: 197 QHQQRKEHWNFVQ 209


>AE013599-869|AAF58935.1|  254|Drosophila melanogaster CG13953-PA
           protein.
          Length = 254

 Score = 29.5 bits (63), Expect = 5.1
 Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 5/70 (7%)
 Frame = -2

Query: 224 HLQKHRNFIHKRQRISPFDERKIHEQPSQYKRGRIHV-----LALRLVQYRSHHEIRRHK 60
           HL +H    H +Q      +   H+Q S  ++   H+     L  +  Q+  HH    H+
Sbjct: 142 HLGQHHTQQHSQQHAQQQQQLMTHQQHSVAQQQHHHLQQQQHLQQQQQQHHHHHHHHHHQ 201

Query: 59  QHDIRNNYWY 30
           Q  +  N+ Y
Sbjct: 202 QLSLHQNHLY 211


>EF058058-1|ABN51176.1|  658|Drosophila melanogaster NKAIN protein.
          Length = 658

 Score = 29.1 bits (62), Expect = 6.8
 Identities = 17/41 (41%), Positives = 20/41 (48%)
 Frame = -3

Query: 214 NTVILSINGNEYPHLTNGRYTSSPPNINAAAYMYSH*GLSS 92
           N++ L  N N  PHL     + S PN N  AY Y   GL S
Sbjct: 441 NSLFLGENNNSQPHLVFHTNSRSSPNNN--AYPYDQSGLPS 479


>AF024604-1|AAB82274.1| 1751|Drosophila melanogaster transcriptional
           co-repressor SIN3A protein.
          Length = 1751

 Score = 29.1 bits (62), Expect = 6.8
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +2

Query: 20  TLQGTNNYSVYRAVCVGVSRGGSYTGQASVRVHVCGRVYIGRAARVSSV 166
           TLQ T +YSV      G  +  +  G  +V++HV GR      A   +V
Sbjct: 147 TLQYTTSYSVASIQAGGTLKANTADGANTVQIHVTGRRTANNPASAQTV 195


>AF024603-1|AAB82273.1| 1773|Drosophila melanogaster transcriptional
           co-repressor SIN3A protein.
          Length = 1773

 Score = 29.1 bits (62), Expect = 6.8
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +2

Query: 20  TLQGTNNYSVYRAVCVGVSRGGSYTGQASVRVHVCGRVYIGRAARVSSV 166
           TLQ T +YSV      G  +  +  G  +V++HV GR      A   +V
Sbjct: 147 TLQYTTSYSVASIQAGGTLKANTADGANTVQIHVTGRRTANNPASAQTV 195


>AE013599-3974|AAN16122.1|  661|Drosophila melanogaster CG9047-PC,
           isoform C protein.
          Length = 661

 Score = 29.1 bits (62), Expect = 6.8
 Identities = 17/41 (41%), Positives = 20/41 (48%)
 Frame = -3

Query: 214 NTVILSINGNEYPHLTNGRYTSSPPNINAAAYMYSH*GLSS 92
           N++ L  N N  PHL     + S PN N  AY Y   GL S
Sbjct: 444 NSLFLGENNNSQPHLVFHTNSRSSPNNN--AYPYDQSGLPS 482


>AE013599-3973|AAF47286.3|  661|Drosophila melanogaster CG9047-PB,
           isoform B protein.
          Length = 661

 Score = 29.1 bits (62), Expect = 6.8
 Identities = 17/41 (41%), Positives = 20/41 (48%)
 Frame = -3

Query: 214 NTVILSINGNEYPHLTNGRYTSSPPNINAAAYMYSH*GLSS 92
           N++ L  N N  PHL     + S PN N  AY Y   GL S
Sbjct: 444 NSLFLGENNNSQPHLVFHTNSRSSPNNN--AYPYDQSGLPS 482


>AE013599-3972|AAM70797.2|  661|Drosophila melanogaster CG9047-PA,
           isoform A protein.
          Length = 661

 Score = 29.1 bits (62), Expect = 6.8
 Identities = 17/41 (41%), Positives = 20/41 (48%)
 Frame = -3

Query: 214 NTVILSINGNEYPHLTNGRYTSSPPNINAAAYMYSH*GLSS 92
           N++ L  N N  PHL     + S PN N  AY Y   GL S
Sbjct: 444 NSLFLGENNNSQPHLVFHTNSRSSPNNN--AYPYDQSGLPS 482


>M74078-1|AAA28498.1|  878|Drosophila melanogaster ecdysone receptor
           protein.
          Length = 878

 Score = 28.7 bits (61), Expect = 8.9
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = -3

Query: 232 SSTICRNTVILSINGNEYPH--LTNGRYTSSPPNINAAA 122
           SST+   T I+ INGN   +   TNG+Y     N+ A A
Sbjct: 86  SSTLPAQTTIIPINGNANGNGGSTNGQYVPGATNLGALA 124


>BT015234-1|AAT94463.1|  878|Drosophila melanogaster RE06878p
           protein.
          Length = 878

 Score = 28.7 bits (61), Expect = 8.9
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = -3

Query: 232 SSTICRNTVILSINGNEYPH--LTNGRYTSSPPNINAAA 122
           SST+   T I+ INGN   +   TNG+Y     N+ A A
Sbjct: 86  SSTLPAQTTIIPINGNANGNGGSTNGQYVPGATNLGALA 124


>BT012469-1|AAS93740.1|  878|Drosophila melanogaster RE33854p
           protein.
          Length = 878

 Score = 28.7 bits (61), Expect = 8.9
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = -3

Query: 232 SSTICRNTVILSINGNEYPH--LTNGRYTSSPPNINAAA 122
           SST+   T I+ INGN   +   TNG+Y     N+ A A
Sbjct: 86  SSTLPAQTTIIPINGNANGNGGSTNGQYVPGATNLGALA 124


>AE013599-153|AAF57280.2|  878|Drosophila melanogaster CG1765-PB,
           isoform B protein.
          Length = 878

 Score = 28.7 bits (61), Expect = 8.9
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = -3

Query: 232 SSTICRNTVILSINGNEYPH--LTNGRYTSSPPNINAAA 122
           SST+   T I+ INGN   +   TNG+Y     N+ A A
Sbjct: 86  SSTLPAQTTIIPINGNANGNGGSTNGQYVPGATNLGALA 124


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,785,780
Number of Sequences: 53049
Number of extensions: 547207
Number of successful extensions: 1558
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1558
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3417159966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)