Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2259
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93393-17|CAB07693.2|  751|Caenorhabditis elegans Hypothetical p...    29   4.7  
AF026214-3|AAB71312.2|  493|Caenorhabditis elegans Amino acid tr...    29   4.7  
AF125956-4|AAD14723.1|  353|Caenorhabditis elegans Serpentine re...    28   8.1  

>Z93393-17|CAB07693.2|  751|Caenorhabditis elegans Hypothetical
           protein Y48E1B.7 protein.
          Length = 751

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 200 IHKRQRISPFDERKIHEQPSQYKRGRIHVLALR 102
           + + Q   P D   + E P+  KRGR+H   LR
Sbjct: 292 LSRSQTFRPVDNPSLEELPTNRKRGRLHQQELR 324


>AF026214-3|AAB71312.2|  493|Caenorhabditis elegans Amino acid
           transporter protein 3 protein.
          Length = 493

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
 Frame = +3

Query: 75  LVVAPILDKPQCEYMYAAAFILGGLLVYLPFVKWGYSL----PFMDKITVFLQMVLEVV 239
           LV+ P+L  P+ +       +L G+ VYL F+ W           D +T+F Q +  VV
Sbjct: 430 LVLVPVLGNPK-DTAIGILIMLSGVPVYLIFIAWKGKPKCIDSLTDSVTIFTQKLFMVV 487


>AF125956-4|AAD14723.1|  353|Caenorhabditis elegans Serpentine
           receptor, class h protein78 protein.
          Length = 353

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -1

Query: 423 EKNYININVEVMKMNFRETFLIILHCNNYCVYDVVDIENDFT 298
           +KNYI +   +M + F    L I +   YC+Y++    N FT
Sbjct: 204 DKNYITLLGRIMNVFFVIEILQINYFVIYCIYNLFFSSNKFT 245


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,115,900
Number of Sequences: 27780
Number of extensions: 294054
Number of successful extensions: 776
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 775
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)