Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2259
(750 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ257416-1|ABB81847.1| 552|Apis mellifera yellow-h protein. 24 1.8
DQ325090-1|ABD14104.1| 178|Apis mellifera complementary sex det... 23 4.0
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 22 5.3
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 22 7.1
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 22 7.1
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 22 7.1
DQ325132-1|ABD14146.1| 189|Apis mellifera complementary sex det... 22 7.1
DQ325131-1|ABD14145.1| 189|Apis mellifera complementary sex det... 22 7.1
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 22 7.1
EF540769-1|ABQ14707.1| 620|Apis mellifera adenosine deaminase p... 21 9.3
DQ325121-1|ABD14135.1| 181|Apis mellifera complementary sex det... 21 9.3
DQ325120-1|ABD14134.1| 181|Apis mellifera complementary sex det... 21 9.3
DQ325119-1|ABD14133.1| 181|Apis mellifera complementary sex det... 21 9.3
DQ325118-1|ABD14132.1| 181|Apis mellifera complementary sex det... 21 9.3
DQ325117-1|ABD14131.1| 181|Apis mellifera complementary sex det... 21 9.3
DQ325116-1|ABD14130.1| 181|Apis mellifera complementary sex det... 21 9.3
DQ325114-1|ABD14128.1| 181|Apis mellifera complementary sex det... 21 9.3
DQ011228-1|AAY63897.1| 486|Apis mellifera Amt-2-like protein pr... 21 9.3
AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex det... 21 9.3
AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter... 21 9.3
AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter... 21 9.3
AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex det... 21 9.3
AF469010-1|AAL93136.1| 678|Apis mellifera cGMP-dependent protei... 21 9.3
>DQ257416-1|ABB81847.1| 552|Apis mellifera yellow-h protein.
Length = 552
Score = 23.8 bits (49), Expect = 1.8
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +3
Query: 351 GVLLKTFLGNSFSSLQH*Y*YNSSLISKYVL 443
G+L+ F +S +QH + Y L SKY L
Sbjct: 334 GLLIYDFFKDSSFRIQHHFFYPDPLASKYEL 364
>DQ325090-1|ABD14104.1| 178|Apis mellifera complementary sex
determiner protein.
Length = 178
Score = 22.6 bits (46), Expect = 4.0
Identities = 7/26 (26%), Positives = 16/26 (61%)
Frame = +3
Query: 303 NHFRYLPHHKHNNYYNGVLLKTFLGN 380
N+++Y ++ +NNY + K ++ N
Sbjct: 87 NNYKYSNYNNYNNYNKKLYYKNYIIN 112
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 22.2 bits (45), Expect = 5.3
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +3
Query: 117 MYAAAFILGGLLVYLPFVKWGYSLPFMDKITVFLQMVLEVVPTST 251
+ A+ +LG L K + + +TVFL MV E +P ++
Sbjct: 244 LIASMAVLGFTLPPDSGEKLSLGVTILLSLTVFLNMVAETMPATS 288
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.8 bits (44), Expect = 7.1
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +3
Query: 204 ITVFLQMVLEVVPTST 251
+TVFL +V E +PT++
Sbjct: 236 LTVFLNLVAESMPTTS 251
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.8 bits (44), Expect = 7.1
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +3
Query: 204 ITVFLQMVLEVVPTST 251
+TVFL +V E +PT++
Sbjct: 236 LTVFLNLVAESMPTTS 251
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.8 bits (44), Expect = 7.1
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +3
Query: 204 ITVFLQMVLEVVPTST 251
+TVFL +V E +PT++
Sbjct: 236 LTVFLNLVAESMPTTS 251
>DQ325132-1|ABD14146.1| 189|Apis mellifera complementary sex
determiner protein.
Length = 189
Score = 21.8 bits (44), Expect = 7.1
Identities = 10/38 (26%), Positives = 19/38 (50%)
Frame = +3
Query: 303 NHFRYLPHHKHNNYYNGVLLKTFLGNSFSSLQH*Y*YN 416
N+++Y ++ +NN YN + N++ L Y N
Sbjct: 87 NNYKYSNYNNYNNNYNNNYNNNY-NNNYKKLYKNYIIN 123
>DQ325131-1|ABD14145.1| 189|Apis mellifera complementary sex
determiner protein.
Length = 189
Score = 21.8 bits (44), Expect = 7.1
Identities = 10/38 (26%), Positives = 19/38 (50%)
Frame = +3
Query: 303 NHFRYLPHHKHNNYYNGVLLKTFLGNSFSSLQH*Y*YN 416
N+++Y ++ +NN YN + N++ L Y N
Sbjct: 87 NNYKYSNYNNYNNNYNNNYNNNY-NNNYKKLYKNYIIN 123
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 7.1
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +3
Query: 204 ITVFLQMVLEVVPTST 251
+TVFL +V E +PT++
Sbjct: 304 LTVFLNLVAESMPTTS 319
>EF540769-1|ABQ14707.1| 620|Apis mellifera adenosine deaminase
protein.
Length = 620
Score = 21.4 bits (43), Expect = 9.3
Identities = 7/32 (21%), Positives = 18/32 (56%)
Frame = -3
Query: 565 HYVIFKTLLPNYGLLHFKIRNIFYQSKINNQI 470
HY+ K+ + NY L +++ F ++ + + +
Sbjct: 576 HYLDAKSSVQNYSLAKHQLKEAFVKAHLGSWV 607
>DQ325121-1|ABD14135.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.4 bits (43), Expect = 9.3
Identities = 6/16 (37%), Positives = 12/16 (75%)
Frame = +3
Query: 303 NHFRYLPHHKHNNYYN 350
N+++Y ++ +NN YN
Sbjct: 87 NNYKYSNYNNYNNNYN 102
>DQ325120-1|ABD14134.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.4 bits (43), Expect = 9.3
Identities = 6/16 (37%), Positives = 12/16 (75%)
Frame = +3
Query: 303 NHFRYLPHHKHNNYYN 350
N+++Y ++ +NN YN
Sbjct: 87 NNYKYSNYNNYNNNYN 102
>DQ325119-1|ABD14133.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.4 bits (43), Expect = 9.3
Identities = 6/16 (37%), Positives = 12/16 (75%)
Frame = +3
Query: 303 NHFRYLPHHKHNNYYN 350
N+++Y ++ +NN YN
Sbjct: 87 NNYKYSNYNNYNNNYN 102
>DQ325118-1|ABD14132.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.4 bits (43), Expect = 9.3
Identities = 6/16 (37%), Positives = 12/16 (75%)
Frame = +3
Query: 303 NHFRYLPHHKHNNYYN 350
N+++Y ++ +NN YN
Sbjct: 87 NNYKYSNYNNYNNNYN 102
>DQ325117-1|ABD14131.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.4 bits (43), Expect = 9.3
Identities = 6/16 (37%), Positives = 12/16 (75%)
Frame = +3
Query: 303 NHFRYLPHHKHNNYYN 350
N+++Y ++ +NN YN
Sbjct: 87 NNYKYSNYNNYNNNYN 102
>DQ325116-1|ABD14130.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.4 bits (43), Expect = 9.3
Identities = 6/16 (37%), Positives = 12/16 (75%)
Frame = +3
Query: 303 NHFRYLPHHKHNNYYN 350
N+++Y ++ +NN YN
Sbjct: 87 NNYKYSNYNNYNNNYN 102
>DQ325114-1|ABD14128.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.4 bits (43), Expect = 9.3
Identities = 6/16 (37%), Positives = 12/16 (75%)
Frame = +3
Query: 303 NHFRYLPHHKHNNYYN 350
N+++Y ++ +NN YN
Sbjct: 87 NNYKYSNYNNYNNNYN 102
>DQ011228-1|AAY63897.1| 486|Apis mellifera Amt-2-like protein
protein.
Length = 486
Score = 21.4 bits (43), Expect = 9.3
Identities = 8/26 (30%), Positives = 14/26 (53%)
Frame = +3
Query: 282 TLKSVK*NHFRYLPHHKHNNYYNGVL 359
+L +++ HF KHN + N +L
Sbjct: 258 SLTNIQLEHFEMKIKRKHNVFVNNIL 283
>AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex
determiner protein.
Length = 419
Score = 21.4 bits (43), Expect = 9.3
Identities = 6/16 (37%), Positives = 12/16 (75%)
Frame = +3
Query: 303 NHFRYLPHHKHNNYYN 350
N+++Y ++ +NNY N
Sbjct: 320 NNYKYSNYNNYNNYNN 335
>AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 593
Score = 21.4 bits (43), Expect = 9.3
Identities = 5/15 (33%), Positives = 9/15 (60%)
Frame = +1
Query: 79 WWLLYWTSLSASTCM 123
WW + WT + + C+
Sbjct: 490 WWKICWTITTPAICV 504
>AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 646
Score = 21.4 bits (43), Expect = 9.3
Identities = 5/15 (33%), Positives = 9/15 (60%)
Frame = +1
Query: 79 WWLLYWTSLSASTCM 123
WW + WT + + C+
Sbjct: 543 WWKICWTITTPAICV 557
>AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex
determiner protein.
Length = 425
Score = 21.4 bits (43), Expect = 9.3
Identities = 6/16 (37%), Positives = 12/16 (75%)
Frame = +3
Query: 303 NHFRYLPHHKHNNYYN 350
N+++Y ++ +NN YN
Sbjct: 320 NNYKYSNYNNYNNNYN 335
>AF469010-1|AAL93136.1| 678|Apis mellifera cGMP-dependent protein
kinase foraging protein.
Length = 678
Score = 21.4 bits (43), Expect = 9.3
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = -2
Query: 77 EIRRHKQHDIRNNYWYL 27
E+ +K HDI +YW L
Sbjct: 535 EVILNKGHDISADYWSL 551
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,842
Number of Sequences: 438
Number of extensions: 4010
Number of successful extensions: 28
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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