Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2258
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit Alp...    56   7e-09
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos...    27   2.2  
SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch...    27   2.9  
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc...    27   2.9  
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    25   8.7  
SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces ...    25   8.7  

>SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit
           Alp13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 55.6 bits (128), Expect = 7e-09
 Identities = 28/72 (38%), Positives = 46/72 (63%)
 Frame = +1

Query: 268 ERVLCYEPDPTKAKVLYDSKVLEVVESKDKRGRXTVEYLIHFQGWNSSWDRCVSEDFVLK 447
           ERVLC+        +LY++K+++     + +G  T  YLIH++GW +SWD  V +D +L+
Sbjct: 9   ERVLCFH-----GPLLYEAKIVDT----EMKGDVTT-YLIHYKGWKNSWDEWVEQDRILQ 58

Query: 448 DTEENRQLQRDL 483
            TEEN + Q++L
Sbjct: 59  WTEENLKTQKEL 70


>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 647

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 20/63 (31%), Positives = 29/63 (46%)
 Frame = -1

Query: 474 LQLSIFLCIFENEVFTDTAIPRRVPSLEMD*ILNSXTPSFVFALYDFKNLGIIKHLGFSR 295
           L +   L  F N+    TA  +R+PS +   IL      FV  +   +N G  K +G  +
Sbjct: 540 LDIRTHLVRFLNKFSIPTA--QRLPSSDCSKILKCLLDGFVRNVAHLQNDGSYKTIGGKQ 597

Query: 294 VWL 286
           VWL
Sbjct: 598 VWL 600


>SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
 Frame = -2

Query: 296 GSGS*HRTRSPSVNLYRSPRVETIVN*CLAQN*WELNKITPFNKCDG---*VCKILVKNK 126
           G+G   +   P  N Y +P    + +  +  +   L ++TPF K DG      KIL+K K
Sbjct: 525 GAGLPSKGYDPGSNTYVAPSSVNVKDVAIDPHSKRLQRLTPFKKWDGKDMKGLKILIKAK 584

Query: 125 KK 120
            K
Sbjct: 585 GK 586


>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
            Prp22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1168

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 17/61 (27%), Positives = 26/61 (42%)
 Frame = -3

Query: 712  IVXRRRTEXXSCQXKQTMNPCRPFRLRLAGYLSKSRRR*SHDGCXXXXXXXXRLYYHXSF 533
            ++ R R    SC  K+ +      R   +GY +   +R SH+GC         +Y H S 
Sbjct: 1031 LMDRYRHPVVSCGRKRELI----LRALCSGYFTNVAKRDSHEGCYKTIVENAPVYMHPSG 1086

Query: 532  V 530
            V
Sbjct: 1087 V 1087


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1502

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 5/69 (7%)
 Frame = +1

Query: 157 PSHLLNGVILLSS--HQF-WARHQLTMVSTRGLRYKFTEGERVLCYEPD--PTKAKVLYD 321
           PS  +    LL S  H   W RH   + +   L  K T  E V  ++PD      K+L D
Sbjct: 144 PSEDIKNDFLLDSLKHALHWDRHAKVVCTAIQLLVKVTGAEAVFAFQPDFFEQSLKLLKD 203

Query: 322 SKVLEVVES 348
               + + S
Sbjct: 204 YSYAQAISS 212


>SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 546

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +2

Query: 62  LESFGRPQPVNIARLLQIIVFFCF 133
           LE FGR  P+ I  L Q I FF +
Sbjct: 322 LEFFGRRMPLIIGALWQSITFFIY 345


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,680,735
Number of Sequences: 5004
Number of extensions: 49391
Number of successful extensions: 124
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)