Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2258
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032626-25|CAH10813.1|  406|Caenorhabditis elegans Hypothetical...    33   0.16 
AL032626-24|CAA21530.1|  499|Caenorhabditis elegans Hypothetical...    33   0.16 
AL032626-28|CAO82072.1|  337|Caenorhabditis elegans Hypothetical...    33   0.29 
AL032626-8|CAA21528.1|  335|Caenorhabditis elegans Hypothetical ...    33   0.29 
AF039711-10|AAB96707.2|  567|Caenorhabditis elegans Yeast prp (s...    28   6.2  

>AL032626-25|CAH10813.1|  406|Caenorhabditis elegans Hypothetical
           protein Y37D8A.11b protein.
          Length = 406

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 18/57 (31%), Positives = 31/57 (54%)
 Frame = +1

Query: 247 RYKFTEGERVLCYEPDPTKAKVLYDSKVLEVVESKDKRGRXTVEYLIHFQGWNSSWD 417
           R +F  GE+V C     T+    YD+ +++++   D +      Y +HF+GWNS +D
Sbjct: 331 REQFIIGEQVTC-----TQNGKPYDAYIVDIITDTDGKDF----YCVHFKGWNSRYD 378



 Score = 33.1 bits (72), Expect = 0.22
 Identities = 21/55 (38%), Positives = 30/55 (54%)
 Frame = +1

Query: 253 KFTEGERVLCYEPDPTKAKVLYDSKVLEVVESKDKRGRXTVEYLIHFQGWNSSWD 417
           +F  GE V C      K KV YD+ + ++   KD  G+    Y IHF+GWN+ +D
Sbjct: 231 RFVIGELVAC----TYKGKV-YDAVITDIKPDKD--GKEC--YCIHFKGWNNRYD 276



 Score = 31.1 bits (67), Expect = 0.87
 Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
 Frame = +1

Query: 226 MVSTRGLRYKFTEGERVLC-YEPDPTKAKVLYDSKVLEVVESKDKRGRXTVEYLIHFQGW 402
           M   R  +  F  GE + C Y+  P      YD+ ++ +  +++  G+    Y +HF+GW
Sbjct: 1   MAPNRTPKQNFAIGEDITCVYKTHP------YDATIIGIENNRE--GKEC--YCVHFKGW 50

Query: 403 NSSWDRCV----SEDFVLKDTEEN 462
           N  +D  +     +D + K T E+
Sbjct: 51  NCRYDEKIVIGEEKDRIFKGTVED 74


>AL032626-24|CAA21530.1|  499|Caenorhabditis elegans Hypothetical
           protein Y37D8A.11a protein.
          Length = 499

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 18/57 (31%), Positives = 31/57 (54%)
 Frame = +1

Query: 247 RYKFTEGERVLCYEPDPTKAKVLYDSKVLEVVESKDKRGRXTVEYLIHFQGWNSSWD 417
           R +F  GE+V C     T+    YD+ +++++   D +      Y +HF+GWNS +D
Sbjct: 424 REQFIIGEQVTC-----TQNGKPYDAYIVDIITDTDGKDF----YCVHFKGWNSRYD 471



 Score = 33.1 bits (72), Expect = 0.22
 Identities = 21/55 (38%), Positives = 30/55 (54%)
 Frame = +1

Query: 253 KFTEGERVLCYEPDPTKAKVLYDSKVLEVVESKDKRGRXTVEYLIHFQGWNSSWD 417
           +F  GE V C      K KV YD+ + ++   KD  G+    Y IHF+GWN+ +D
Sbjct: 324 RFVIGELVAC----TYKGKV-YDAVITDIKPDKD--GKEC--YCIHFKGWNNRYD 369



 Score = 31.1 bits (67), Expect = 0.87
 Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
 Frame = +1

Query: 226 MVSTRGLRYKFTEGERVLC-YEPDPTKAKVLYDSKVLEVVESKDKRGRXTVEYLIHFQGW 402
           M   R  +  F  GE + C Y+  P      YD+ ++ +  +++  G+    Y +HF+GW
Sbjct: 1   MAPNRTPKQNFAIGEDITCVYKTHP------YDATIIGIENNRE--GKEC--YCVHFKGW 50

Query: 403 NSSWDRCV----SEDFVLKDTEEN 462
           N  +D  +     +D + K T E+
Sbjct: 51  NCRYDEKIVIGEEKDRIFKGTVED 74


>AL032626-28|CAO82072.1|  337|Caenorhabditis elegans Hypothetical
           protein Y37D8A.9b protein.
          Length = 337

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = +1

Query: 256 FTEGERVLC-YEPDPTKAKVLYDSKVLEVVESKDKRGRXTVEYLIHFQGWNSSWD 417
           F  GE V C Y+  P      YD+K+ ++  + D  G+    Y +HF+GWN+ +D
Sbjct: 7   FEVGENVACIYKGKP------YDAKITDIKTNSD--GKEL--YCVHFKGWNNRYD 51


>AL032626-8|CAA21528.1|  335|Caenorhabditis elegans Hypothetical
           protein Y37D8A.9a protein.
          Length = 335

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = +1

Query: 256 FTEGERVLC-YEPDPTKAKVLYDSKVLEVVESKDKRGRXTVEYLIHFQGWNSSWD 417
           F  GE V C Y+  P      YD+K+ ++  + D  G+    Y +HF+GWN+ +D
Sbjct: 7   FEVGENVACIYKGKP------YDAKITDIKTNSD--GKEL--YCVHFKGWNNRYD 51


>AF039711-10|AAB96707.2|  567|Caenorhabditis elegans Yeast prp
           (splicing factor) relatedprotein 17 protein.
          Length = 567

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 25/105 (23%), Positives = 41/105 (39%), Gaps = 4/105 (3%)
 Frame = +1

Query: 196 HQFWARHQLTMVSTRGLRYKFTEGERVLCYEPDPTKAKVLYDSKVLEVVESK----DKRG 363
           ++F    Q+    T G     T       +  D  KA+     K + + ESK    +KR 
Sbjct: 104 NEFHFNRQIRSFDTLGYAQNPTAESGTTHFVGDVKKAEA---EKGVSLFESKKTGGEKRK 160

Query: 364 RXTVEYLIHFQGWNSSWDRCVSEDFVLKDTEENRQLQRDLAEKSQ 498
           R   +      G+   W R + E  V K T E ++   ++ +K Q
Sbjct: 161 RVRNDDSADIDGYTGPWSRFIDEKTVAKPTPELQKQMDEIVKKRQ 205


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,982,784
Number of Sequences: 27780
Number of extensions: 277653
Number of successful extensions: 677
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)