Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2255
(600 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0260 - 16197522-16197669,16198027-16198130,16198508-161987... 35 0.043
05_06_0129 - 25856981-25857568,25857652-25858058,25858227-25858410 31 0.93
08_01_1013 + 10251463-10251858,10252366-10252434,10252545-102526... 29 2.8
03_06_0690 - 35571816-35572586 29 2.8
03_02_0340 + 7635354-7635621,7635992-7636121,7636865-7636929,763... 29 2.8
12_02_0326 + 17555731-17556387 28 5.0
11_01_0377 + 2877530-2878577,2878721-2878803 28 5.0
11_07_0002 - 27171791-27172222 28 6.6
09_02_0279 + 6702517-6702948 28 6.6
04_04_0161 + 23203786-23203848,23204141-23204180,23204865-232050... 27 8.7
02_04_0635 - 24646603-24647337 27 8.7
02_01_0743 - 5530184-5531078,5531160-5531405,5531815-5532450,553... 27 8.7
>09_04_0260 -
16197522-16197669,16198027-16198130,16198508-16198719,
16198795-16198900,16199006-16199119,16199200-16199417,
16199837-16199900,16199982-16200335,16200609-16200767,
16201486-16202907
Length = 966
Score = 35.1 bits (77), Expect = 0.043
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +2
Query: 2 LADLQMEEYARLFIEAGYDLPTITRMTPEDLTAVGIKKPNHRKRLKAELANLNVPDN 172
L +L + +Y +FI+ D T+ +T EDL +GI RK++ L L +N
Sbjct: 499 LRNLGLSKYEEIFIKEEVDWETLQWLTEEDLLGMGITSLGPRKKIAHALCELRKKNN 555
>05_06_0129 - 25856981-25857568,25857652-25858058,25858227-25858410
Length = 392
Score = 30.7 bits (66), Expect = 0.93
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Frame = +2
Query: 2 LADLQMEEYA---RLFIEAGYDLPTITRMTPEDLTAVGIKKPNHRK-RLKAELANLNVPD 169
+ L M+E A F + Y P ITR+ + L AVG H++ + + +L L+ P
Sbjct: 203 IVSLMMQEIAISKGTFTQGIYYAPYITRLIQDKLGAVGQNLKKHKQYKPRLQLGALHAPR 262
Query: 170 NLPDYIPGS 196
P PG+
Sbjct: 263 AAPSSHPGA 271
>08_01_1013 +
10251463-10251858,10252366-10252434,10252545-10252652,
10253261-10253326,10254258-10254395,10255047-10255094,
10256292-10256398,10257228-10257302,10258317-10258368,
10258485-10259068,10259944-10260150,10260236-10260407
Length = 673
Score = 29.1 bits (62), Expect = 2.8
Identities = 19/58 (32%), Positives = 25/58 (43%)
Frame = +2
Query: 5 ADLQMEEYARLFIEAGYDLPTITRMTPEDLTAVGIKKPNHRKRLKAELANLNVPDNLP 178
AD+ M + A L A D R P A G KP + KAE + L D++P
Sbjct: 13 ADIDMADLATLDAPASSDAAAAARFRPR---AKGKPKPKPKPEPKAEDSKLKADDSIP 67
>03_06_0690 - 35571816-35572586
Length = 256
Score = 29.1 bits (62), Expect = 2.8
Identities = 12/28 (42%), Positives = 21/28 (75%)
Frame = +2
Query: 287 LAWEDLEDMGIVRLGHQKKILLAIKRVK 370
L EDL+DMGI +G ++K+ AI++++
Sbjct: 223 LTLEDLKDMGIGAVGSRRKLYAAIQKLQ 250
>03_02_0340 +
7635354-7635621,7635992-7636121,7636865-7636929,
7637255-7637529,7640204-7640441,7641095-7641228,
7641340-7641414,7641675-7641776,7642154-7642263,
7642334-7642430
Length = 497
Score = 29.1 bits (62), Expect = 2.8
Identities = 28/113 (24%), Positives = 44/113 (38%), Gaps = 3/113 (2%)
Frame = +1
Query: 22 GVRAALHRGW---VRSADHNKDDSRGPHGCRHQETQPPQEVKGRARQSQRTG*FARLHTG 192
GV++ + R + V +N P +H + V R QS +T +H
Sbjct: 90 GVKSGITRNYWYHVWPVMYNSSTITEPQYYQHAQRYLFVIVIDRTIQSPQTAHTICIHHT 149
Query: 193 FLRRMVASSTSGRVRASPSGAGLSXRARRHSTRLGGS*GHGNSAAWSPEENTA 351
++ +T G + SP+ GL A R + G G +AA EE A
Sbjct: 150 LKKKKTRRNTGGWLFTSPALVGLPRAAAARGERRRAAEGRGGAAAPGGEEEEA 202
>12_02_0326 + 17555731-17556387
Length = 218
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +2
Query: 287 LAWEDLEDMGIVRLGHQKKILLAIKRV 367
L +DL DMGI +G ++K+ AI+R+
Sbjct: 176 LTMDDLRDMGIGAVGARRKLYCAIQRL 202
>11_01_0377 + 2877530-2878577,2878721-2878803
Length = 376
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +3
Query: 120 TTARG*RQSSPISTYRIICQTTYRVP*KNGCVFYVW 227
TT+ + P+ TYR IC+ +R+ +N F+ W
Sbjct: 41 TTSGEEEKPKPVVTYRYICENIHRLD-RNDPFFFTW 75
>11_07_0002 - 27171791-27172222
Length = 143
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +1
Query: 211 ASSTSGRVRASPSGAGLSXRARRHSTRLGG 300
A ST VR SP+GAG S ST +GG
Sbjct: 66 AGSTPAGVRGSPAGAGGSPGGGSGSTPVGG 95
>09_02_0279 + 6702517-6702948
Length = 143
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +1
Query: 211 ASSTSGRVRASPSGAGLSXRARRHSTRLGG 300
A ST VR SP+GAG S ST +GG
Sbjct: 66 AGSTPAGVRGSPAGAGGSPGGGSGSTPVGG 95
>04_04_0161 +
23203786-23203848,23204141-23204180,23204865-23205016,
23205270-23205406,23206356-23206396,23206500-23207098,
23207599-23207679,23208146-23208208,23209141-23209197
Length = 410
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +2
Query: 2 LADLQMEEYARLFIEAGYDLPTITRMTPEDLTAVGIKKPNHRKRLKA 142
L L +E+Y LF D+ +++M DL +G+ +K L+A
Sbjct: 355 LNSLGLEKYVFLFHAEEVDMAALSQMGDSDLKEIGVPMGPRKKILQA 401
>02_04_0635 - 24646603-24647337
Length = 244
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = +1
Query: 187 TGFLRRMVASSTSGRVRASPSGAGLSXRARR 279
TGF + ST G R+SP+G +S RARR
Sbjct: 178 TGFDVTVKIPSTGGGDRSSPAGMLVSCRARR 208
>02_01_0743 -
5530184-5531078,5531160-5531405,5531815-5532450,
5534499-5534607,5536157-5536321,5536446-5536543,
5536648-5536898
Length = 799
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -2
Query: 350 AVFSSGDQAALFPCPQDPPK 291
A+F+ G AA F CP PPK
Sbjct: 674 AMFAGGGGAAPFRCPASPPK 693
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,179,965
Number of Sequences: 37544
Number of extensions: 343216
Number of successful extensions: 966
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 966
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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