Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2253
         (350 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0186 + 21427739-21428813,21428894-21428977,21429136-21429254     27   5.5  
05_05_0352 + 24328117-24328303,24328451-24328559,24330634-243306...    26   9.6  
03_05_1065 + 30061588-30061883,30061995-30062056,30062196-300622...    26   9.6  

>09_06_0186 + 21427739-21428813,21428894-21428977,21429136-21429254
          Length = 425

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 254 NVGRGHGRTAPWPRGGAASTVXV 322
           NVG    RT+P+P+  AA TV +
Sbjct: 26  NVGNQQPRTSPFPKDKAAGTVGI 48


>05_05_0352 +
           24328117-24328303,24328451-24328559,24330634-24330692,
           24331139-24331220,24331361-24331481,24331751-24332278,
           24332724-24332831,24332934-24333131,24334043-24334234,
           24336116-24336199,24336385-24336525,24336683-24336748,
           24336880-24337047,24337134-24337463,24337568-24337666
          Length = 823

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 245 LSTNVGRGHGRTAPWPRGGAASTVXVLXXR 334
           L  ++  GHG  APW R GA +   ++  R
Sbjct: 453 LYPSLASGHGDLAPWTRYGALNNEQMVGCR 482


>03_05_1065 + 30061588-30061883,30061995-30062056,30062196-30062276,
            30062391-30062464,30062547-30062629,30063044-30063147,
            30063526-30063665,30063736-30063783,30063939-30063991,
            30064178-30064262,30064346-30064412,30064496-30064606,
            30065262-30065283,30066244-30071110,30071186-30071374,
            30071463-30071577,30072329-30073388,30074247-30074694,
            30074966-30075019,30075105-30076898,30076989-30077949,
            30078271-30078384,30078459-30078613,30078934-30079026,
            30079341-30079613,30093423-30093975,30094465-30094540,
            30094619-30094718
          Length = 4025

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 15/57 (26%), Positives = 29/57 (50%)
 Frame = -1

Query: 203  LNN*NLSKYDS*SLVEYSVVLDAISLESSTGLXRHTVRRLECVSQNGRSFRSAIYKL 33
            +NN  L+  +S   VE S+  +  S   +T L    +R  EC + + +S+  ++ +L
Sbjct: 3909 INNVTLTNVNSVDEVEISLSKERKSENENTNLPFKQIRGQECDNSDPKSYPDSVTRL 3965


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,955,261
Number of Sequences: 37544
Number of extensions: 110776
Number of successful extensions: 228
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 227
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 518263348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)