Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2253
         (350 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73424-3|CAA97781.2| 1150|Caenorhabditis elegans Hypothetical pr...    29   0.71 
Z75550-9|CAE54924.1| 1291|Caenorhabditis elegans Hypothetical pr...    27   3.8  
Z75550-8|CAA99926.1| 1307|Caenorhabditis elegans Hypothetical pr...    27   3.8  
Z54270-8|CAA91029.2|  301|Caenorhabditis elegans Hypothetical pr...    27   3.8  
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    26   8.7  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    26   8.7  

>Z73424-3|CAA97781.2| 1150|Caenorhabditis elegans Hypothetical
           protein C44B9.4 protein.
          Length = 1150

 Score = 29.5 bits (63), Expect = 0.71
 Identities = 16/33 (48%), Positives = 17/33 (51%)
 Frame = +2

Query: 212 D*TTPIAQRDRLSTNVGRGHGRTAPWPRGGAAS 310
           D T P  QR R    VGRG GR    PRG  +S
Sbjct: 854 DTTIPKQQRKRNPQPVGRGRGRGGGRPRGSRSS 886


>Z75550-9|CAE54924.1| 1291|Caenorhabditis elegans Hypothetical protein
            T22C1.10b protein.
          Length = 1291

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 137  AISLESSTGLXRHTVRRLECVSQNGRSFRS 48
            A+ L+ +TGL  H +R L CV+ N   F S
Sbjct: 1076 ALRLQLTTGLRFHPLRNLFCVTGNRAFFAS 1105


>Z75550-8|CAA99926.1| 1307|Caenorhabditis elegans Hypothetical protein
            T22C1.10a protein.
          Length = 1307

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 137  AISLESSTGLXRHTVRRLECVSQNGRSFRS 48
            A+ L+ +TGL  H +R L CV+ N   F S
Sbjct: 1092 ALRLQLTTGLRFHPLRNLFCVTGNRAFFAS 1121


>Z54270-8|CAA91029.2|  301|Caenorhabditis elegans Hypothetical
           protein F11C1.4 protein.
          Length = 301

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +2

Query: 164 TITNHICLGFNYLGVID*TTPIAQRDRLSTNVGRGH 271
           T+  H  L + Y GV D   PI Q +++S  + RGH
Sbjct: 237 TLLFHKNLIYFYYGVNDGWCPIEQGNQMSERLSRGH 272


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 303 APPRGHGAVRPCPRPT 256
           APP GHG + P P P+
Sbjct: 373 APPSGHGMIPPPPPPS 388


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 303 APPRGHGAVRPCPRPT 256
           APP GHG + P P P+
Sbjct: 383 APPSGHGMIPPPPPPS 398


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,717,424
Number of Sequences: 27780
Number of extensions: 88942
Number of successful extensions: 160
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 472561672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)