Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2252
         (470 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z47808-5|CAA87773.1|  294|Caenorhabditis elegans Hypothetical pr...    83   1e-16
Z68760-4|CAE17822.1|  160|Caenorhabditis elegans Hypothetical pr...    30   0.96 
AF098501-10|AAC67405.3| 1744|Caenorhabditis elegans Mtm (myotubu...    28   3.9  
Z70286-2|CAA94290.1|  529|Caenorhabditis elegans Hypothetical pr...    27   5.1  
U49795-1|AAB03859.1|  673|Caenorhabditis elegans DNA-binding pro...    27   5.1  
U49794-1|AAB03858.1|  673|Caenorhabditis elegans lag-1 protein.        27   5.1  
AJ582071-1|CAE46541.1|  529|Caenorhabditis elegans flavin monoox...    27   5.1  
AF100663-8|AAM98006.1|  671|Caenorhabditis elegans Lin-12 and gl...    27   5.1  
AF100663-7|AAC68978.3|  673|Caenorhabditis elegans Lin-12 and gl...    27   5.1  
AF067617-4|AAC17557.1|  381|Caenorhabditis elegans Hypothetical ...    27   5.1  
Z73899-2|CAA98074.1|  536|Caenorhabditis elegans Hypothetical pr...    27   9.0  
AL110482-6|CAB60339.1|  179|Caenorhabditis elegans Hypothetical ...    27   9.0  

>Z47808-5|CAA87773.1|  294|Caenorhabditis elegans Hypothetical
           protein D2013.7 protein.
          Length = 294

 Score = 83.0 bits (196), Expect = 1e-16
 Identities = 46/155 (29%), Positives = 81/155 (52%), Gaps = 14/155 (9%)
 Frame = +3

Query: 33  RNADSHRVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEAELNYAMDVYELNRRVNSSES 212
           +N    + +GTL+G  +KG ++VTNCF +P  E  D +E +  +   +    ++ + +E 
Sbjct: 30  KNTGQEKCMGTLMGYYEKGSIQVTNCFAIPFNESNDDLEIDDQFNQQMISALKKTSPNEQ 89

Query: 213 IVGWWATGNEVTNHSSVIHEYYSRECRE--------PVHV-TLDTSLAGG---RMGLRAY 356
            VGW+ T +++T+   + H+YY R   E        P+ V T+DT+ +G    RM +RAY
Sbjct: 90  PVGWFLTTSDITSSCLIYHDYYVRVITEASARRESPPIVVLTIDTTFSGDMSKRMPVRAY 149

Query: 357 VCVPLGVPN--GKQGCMFTPVDVTLTCYEPXIVGL 455
           +    G+P   G    +F P+ V L  +   +V +
Sbjct: 150 LRSKAGIPGAAGPHCAIFNPLRVELAAFPGELVAM 184


>Z68760-4|CAE17822.1|  160|Caenorhabditis elegans Hypothetical
           protein F36H1.9 protein.
          Length = 160

 Score = 29.9 bits (64), Expect = 0.96
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 106 TASACHTKNMPIKSKRNLITRWMFTS 183
           T  ACHT  M +  K+N IT W +++
Sbjct: 55  TLVACHTLQMFLAEKKNTITHWKYST 80


>AF098501-10|AAC67405.3| 1744|Caenorhabditis elegans Mtm
            (myotubularin) family protein 5 protein.
          Length = 1744

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = +2

Query: 356  CLCTIRSAKWKARLHVHSCRCHSH 427
            C CT    +W   +H   CR H H
Sbjct: 1556 CYCTNILTRWSKAVHCKKCRIHVH 1579


>Z70286-2|CAA94290.1|  529|Caenorhabditis elegans Hypothetical
           protein K08C7.5 protein.
          Length = 529

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 147 RLDRHVLCVARRSSWLLPPLLCRSCP 70
           R+ + V  V RR +WL+P L  R  P
Sbjct: 205 RIAKQVYLVTRRGTWLIPKLETRGLP 230


>U49795-1|AAB03859.1|  673|Caenorhabditis elegans DNA-binding
           protein LAG-1 protein.
          Length = 673

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = +1

Query: 70  WARATKEWWK*PTASACHTKNMPIKSKRNLITRWMFTS*TEESIPLKVLLV 222
           W  AT       +  + H    P+   RN  T WMFT+ T   + + + LV
Sbjct: 593 WFGATPVETTFRSEESLHCSIPPVSQVRNEQTHWMFTNRTTGDVEVPISLV 643


>U49794-1|AAB03858.1|  673|Caenorhabditis elegans lag-1 protein.
          Length = 673

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = +1

Query: 70  WARATKEWWK*PTASACHTKNMPIKSKRNLITRWMFTS*TEESIPLKVLLV 222
           W  AT       +  + H    P+   RN  T WMFT+ T   + + + LV
Sbjct: 593 WFGATPVETTFRSEESLHCSIPPVSQVRNEQTHWMFTNRTTGDVEVPISLV 643


>AJ582071-1|CAE46541.1|  529|Caenorhabditis elegans flavin
           monooxygenase protein.
          Length = 529

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 147 RLDRHVLCVARRSSWLLPPLLCRSCP 70
           R+ + V  V RR +WL+P L  R  P
Sbjct: 205 RIAKQVYLVTRRGTWLIPKLETRGLP 230


>AF100663-8|AAM98006.1|  671|Caenorhabditis elegans Lin-12 and glp-1
           phenotype protein1, isoform b protein.
          Length = 671

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = +1

Query: 70  WARATKEWWK*PTASACHTKNMPIKSKRNLITRWMFTS*TEESIPLKVLLV 222
           W  AT       +  + H    P+   RN  T WMFT+ T   + + + LV
Sbjct: 591 WFGATPVETTFRSEESLHCSIPPVSQVRNEQTHWMFTNRTTGDVEVPISLV 641


>AF100663-7|AAC68978.3|  673|Caenorhabditis elegans Lin-12 and glp-1
           phenotype protein1, isoform a protein.
          Length = 673

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = +1

Query: 70  WARATKEWWK*PTASACHTKNMPIKSKRNLITRWMFTS*TEESIPLKVLLV 222
           W  AT       +  + H    P+   RN  T WMFT+ T   + + + LV
Sbjct: 593 WFGATPVETTFRSEESLHCSIPPVSQVRNEQTHWMFTNRTTGDVEVPISLV 643


>AF067617-4|AAC17557.1|  381|Caenorhabditis elegans Hypothetical
           protein T04D1.2 protein.
          Length = 381

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +1

Query: 1   FYFKLWTHTNVEMQILTELSAPYWARA 81
           FY  +W+ T V  + LT     YW R+
Sbjct: 118 FYDMMWSQTTVSYRFLTTPPVTYWIRS 144


>Z73899-2|CAA98074.1|  536|Caenorhabditis elegans Hypothetical
           protein ZK829.4 protein.
          Length = 536

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +3

Query: 81  DKGVVEVTNCFCVPHKEHADQVEAELNYAMDVYE 182
           D G  EV   +   H EH    +  + Y++DV E
Sbjct: 103 DNGEFEVIEAWRAQHSEHRTPTKGGIRYSLDVCE 136


>AL110482-6|CAB60339.1|  179|Caenorhabditis elegans Hypothetical
           protein Y39G8B.7 protein.
          Length = 179

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -3

Query: 99  LPPLLCRSCPIRCR*LCENLHFDVRMRPQFEIK 1
           L PLL +SCP+ C  LC +      + P F+ K
Sbjct: 43  LLPLLTQSCPVTCN-LCPSTVSPTTLAPCFDDK 74


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,599,017
Number of Sequences: 27780
Number of extensions: 250716
Number of successful extensions: 576
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 850313440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)